3D Protein
3D protein structure research focuses on understanding and predicting the three-dimensional arrangements of amino acids in proteins, crucial for deciphering their function and designing new therapeutics. Current research emphasizes developing and applying advanced machine learning models, including graph neural networks, diffusion models, and equivariant networks, to predict both static and dynamic protein structures, often leveraging large datasets of experimental structures and molecular dynamics simulations. These advancements are significantly impacting drug discovery, protein engineering, and our fundamental understanding of biological processes by enabling more accurate predictions of protein behavior and interactions.
Papers
4D Diffusion for Dynamic Protein Structure Prediction with Reference Guided Motion Alignment
Kaihui Cheng, Ce Liu, Qingkun Su, Jun Wang, Liwei Zhang, Yining Tang, Yao Yao, Siyu Zhu, Yuan Qi
Dynamic PDB: A New Dataset and a SE(3) Model Extension by Integrating Dynamic Behaviors and Physical Properties in Protein Structures
Ce Liu, Jun Wang, Zhiqiang Cai, Yingxu Wang, Huizhen Kuang, Kaihui Cheng, Liwei Zhang, Qingkun Su, Yining Tang, Fenglei Cao, Limei Han, Siyu Zhu, Yuan Qi