Drug Discovery
Drug discovery, the process of identifying and developing new therapeutic agents, is being revolutionized by artificial intelligence. Current research focuses on improving the accuracy and efficiency of computational models for predicting molecular properties, drug-target interactions, and pharmacokinetics, employing techniques like graph neural networks, transformers, and diffusion models, often enhanced by self-supervised learning and multi-task learning strategies. These advancements aim to accelerate the lengthy and expensive drug development pipeline, ultimately leading to faster identification of effective and safer drugs. The integration of large language models and quantum computing further expands the possibilities for innovative drug design and discovery.
Papers
MAMMAL -- Molecular Aligned Multi-Modal Architecture and Language
Yoel Shoshan, Moshiko Raboh, Michal Ozery-Flato, Vadim Ratner, Alex Golts, Jeffrey K. Weber, Ella Barkan, Simona Rabinovici-Cohen, Sagi Polaczek, Ido Amos, Ben Shapira, Liam Hazan, Matan Ninio, Sivan Ravid, Michael M. Danziger, Joseph A. Morrone, Parthasarathy Suryanarayanan, Michal Rosen-Zvi, Efrat Hexter
Contextual Representation Anchor Network to Alleviate Selection Bias in Few-Shot Drug Discovery
Ruifeng Li, Wei Liu, Xiangxin Zhou, Mingqian Li, Yuhua Zhou, Yuan Yao, Qiang Zhang, Hongyang Chen
TurboHopp: Accelerated Molecule Scaffold Hopping with Consistency Models
Kiwoong Yoo, Owen Oertell, Junhyun Lee, Sanghoon Lee, Jaewoo Kang
Multi-view biomedical foundation models for molecule-target and property prediction
Parthasarathy Suryanarayanan, Yunguang Qiu, Shreyans Sethi, Diwakar Mahajan, Hongyang Li, Yuxin Yang, Elif Eyigoz, Aldo Guzman Saenz, Daniel E. Platt, Timothy H. Rumbell, Kenney Ng, Sanjoy Dey, Myson Burch, Bum Chul Kwon, Pablo Meyer, Feixiong Cheng, Jianying Hu, Joseph A. Morrone
Efficient Biological Data Acquisition through Inference Set Design
Ihor Neporozhnii, Julien Roy, Emmanuel Bengio, Jason Hartford
Y-Mol: A Multiscale Biomedical Knowledge-Guided Large Language Model for Drug Development
Tengfei Ma, Xuan Lin, Tianle Li, Chaoyi Li, Long Chen, Peng Zhou, Xibao Cai, Xinyu Yang, Daojian Zeng, Dongsheng Cao, Xiangxiang Zeng
MF-LAL: Drug Compound Generation Using Multi-Fidelity Latent Space Active Learning
Peter Eckmann, Dongxia Wu, Germano Heinzelmann, Michael K Gilson, Rose Yu
Enhancing Uncertainty Quantification in Drug Discovery with Censored Regression Labels
Emma Svensson, Hannah Rosa Friesacher, Susanne Winiwarter, Lewis Mervin, Adam Arany, Ola Engkvist
Large Language Models in Drug Discovery and Development: From Disease Mechanisms to Clinical Trials
Yizhen Zheng, Huan Yee Koh, Maddie Yang, Li Li, Lauren T. May, Geoffrey I. Webb, Shirui Pan, George Church