Protein Interaction Network
Protein interaction networks (PINs) map the complex relationships between proteins within a cell or organism, aiming to elucidate biological processes and disease mechanisms. Current research heavily utilizes graph neural networks, including graph convolutional networks (GCNs) and graph attention networks (GATs), to analyze these networks, often integrating protein sequence and expression data to improve prediction accuracy in applications like disease classification and protein function prediction. These analyses reveal insights into disease subtypes, evolutionary relationships between species, and the underlying organizational principles of PINs, ultimately contributing to a deeper understanding of biological systems and informing personalized medicine strategies.
Papers
Interactive Visualization of Protein RINs using NetworKit in the Cloud
Eugenio Angriman, Fabian Brandt-Tumescheit, Leon Franke, Alexander van der Grinten, Henning Meyerhenke
DeepAutoPIN: An automorphism orbits based deep neural network for characterizing the organizational diversity of protein interactomes across the tree of life
Vikram Singh, Vikram Singh