scRNA Seq Data
Single-cell RNA sequencing (scRNA-seq) data analysis aims to decipher the gene expression profiles of individual cells within a tissue, revealing cellular heterogeneity and facilitating biological discovery. Current research heavily emphasizes developing advanced computational methods, including graph neural networks, diffusion transformers, and various deep learning architectures like variational autoencoders and transformers, to overcome challenges posed by the high dimensionality, sparsity, and noise inherent in scRNA-seq data. These efforts focus on improving clustering accuracy, automating data analysis pipelines, and enhancing dimensionality reduction techniques for more efficient and insightful biological interpretation. The resulting advancements significantly impact biological research by enabling more precise characterization of cell types, identification of cell-cell interactions, and improved understanding of complex biological processes and diseases.
Papers
scCDCG: Efficient Deep Structural Clustering for single-cell RNA-seq via Deep Cut-informed Graph Embedding
Ping Xu, Zhiyuan Ning, Meng Xiao, Guihai Feng, Xin Li, Yuanchun Zhou, Pengfei Wang
scRDiT: Generating single-cell RNA-seq data by diffusion transformers and accelerating sampling
Shengze Dong, Zhuorui Cui, Ding Liu, Jinzhi Lei