Virtual Screening
Virtual screening is a computational technique used in drug discovery to identify promising drug candidates from vast chemical libraries by predicting their binding affinity to target proteins. Current research emphasizes improving the efficiency and accuracy of virtual screening through the development of advanced machine learning models, including graph neural networks, transformers, and generative models like Generative Flow Networks and Variational Autoencoders, often incorporating contrastive learning and active learning strategies. These advancements aim to reduce the computational cost and time required for screening, ultimately accelerating the drug discovery process and enabling the exploration of larger chemical spaces. The impact of these improvements is significant, potentially leading to faster identification of drug candidates and more efficient drug development.
Papers
Bioptic -- A Target-Agnostic Potency-Based Small Molecules Search Engine
Vlad Vinogradov, Ivan Izmailov, Simon Steshin, Kong T. Nguyen
Scoreformer: A Surrogate Model For Large-Scale Prediction of Docking Scores
Álvaro Ciudad, Adrián Morales-Pastor, Laura Malo, Isaac Filella-Mercè, Victor Guallar, Alexis Molina
From Theory to Therapy: Reframing SBDD Model Evaluation via Practical Metrics
Bowen Gao, Haichuan Tan, Yanwen Huang, Minsi Ren, Xiao Huang, Wei-Ying Ma, Ya-Qin Zhang, Yanyan Lan
Enhancing Ligand Pose Sampling for Molecular Docking
Patricia Suriana, Ron O. Dror
Transfer Learning across Different Chemical Domains: Virtual Screening of Organic Materials with Deep Learning Models Pretrained on Small Molecule and Chemical Reaction Data
Chengwei Zhang, Yushuang Zhai, Ziyang Gong, Hongliang Duan, Yuan-Bin She, Yun-Fang Yang, An Su