Paper ID: 2112.13117 • Published Dec 24, 2021
Application of Markov Structure of Genomes to Outlier Identification and Read Classification
Alan F. Karr, Jason Hauzel, Adam A. Porter, Marcel Schaefer
TL;DR
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In this paper we apply the structure of genomes as second-order Markov processes specified by the distributions of successive triplets of bases to two bioinformatics problems: identification of outliers in genome databases and read classification in metagenomics, using real coronavirus and adenovirus data.