Closest String Problem

The Closest String Problem seeks to identify a string that minimizes the overall distance to a given set of strings, a computationally challenging task with applications in diverse fields like bioinformatics and coding theory. Current research focuses on developing efficient algorithms, including heuristic approaches like beam search combined with alphabet pruning and local search optimization, to improve solution quality, particularly for non-binary sequences such as DNA. While theoretical work establishes limitations on achieving significantly faster solutions than exhaustive search for certain problem instances, ongoing efforts explore alternative algorithmic strategies, such as A* search and quantum computing approaches, to tackle this NP-hard problem more effectively. These advancements have implications for various applications requiring efficient string comparison and pattern matching.

Papers