Cross-Layer Semantic Flow Reconstruction for Attack Detection in Agentic Systems

LLM-based agentic systems are rapidly evolving to perform complex autonomous tasks through dynamic tool invocation, stateful memory management, and multi-agent collaboration. However, this semantics-driven execution paradigm creates a severe semantic gap between low-level physical events and high-level execution intent, making post-hoc security auditing fundamentally difficult. Existing representation mechanisms, including static SBOMs and runtime logs, provide only fragmented evidence and fail to capture cognitive-state evolution, capability bindings, persistent memory contamination, and cascading risk propagation across interacting agents. To bridge this gap, we propose Agent-BOM, a unified structural representation for agent security auditing. Agent-BOM models an agentic system as a hierarchical attributed directed graph that separates static capability bases, such as models, tools, and long-term memory, from dynamic runtime semantic states, such as goals, reasoning trajectories, and actions. These layers are connected through semantic edges and security attributes, transforming fragmented execution traces into queryable audit paths. Building on Agent-BOM, we develop a graph-query-based paradigm for path-level risk assessment and instantiate it with the OWASP Agentic Top 10. We further implement an auditing plugin in the OpenClaw environment to construct Agent-BOM from live executions. Evaluation on representative real-world agentic attack scenarios shows that Agent-BOM can reconstruct stealthy attack chains, including cross-session memory poisoning and tool misuse, capability supply-chain hijacking and unexpected code execution, multi-agent ecosystem hijacking, and privilege and trust abuse. These results demonstrate that Agent-BOM provides a unified and auditable foundation for root-cause analysis and security adjudication in complex agentic ecosystems.

LLM agents are deployed into infrastructure that grants them broad host authority, yet existing agent-security benchmarks and defenses operate almost exclusively at the application telemetry layer: the served tool manifest, the user prompt, and the model's messages. Some threats, however, smuggle malicious instructions and actions past the application boundary, leaving them invisible to that layer. In this work, we bridge that gap by pairing application-level agent telemetry with kernel-level syscall traces to present the first paired-evidence characterization of kernel-level versus application-layer signal for agent security. To quantify the value of the enhanced telemetry, we introduce Agent Cross-Layer Evidence (ACE), a paired-session corpus of 4,047 sessions and 17 threat models spanning six delivery-vector families and 14 of the 25 OWASP LLM and agentic threat categories, organized into 12 attack mechanics with per-mechanic characterization of where the most discriminative evidence lies. Across four distinct detector families, we find that kernel evidence is discriminative on its own and that composing it with application-layer evidence generally outperforms either single-layer view, revealing complementary signals that single-layer analyses can miss. We further demonstrate generalization to unseen attack families and transfer to an alternate agent runtime. Together, these findings establish the value of cross-layer evidence for agent security.

Agentic computing systems, while immensely capable, raise serious security, privacy, and safety concerns. A key issue is that the full set of functionalities offered by these systems, combined with their probabilistic execution flows, is not known beforehand. Given this lack of characterization, it is challenging to validate whether a system has successfully carried out the user's intended task or instead executed irrelevant actions, potentially as a consequence of compromise. We present Agent Sentry, a runtime defense that learns a bound on an agent's benign execution from prior legitimate executions and flags any action that falls outside this bound. Agent Sentry layers three complementary checks: a structural classifier over the sequence of actions and the provenance of each function's arguments; a deterministic allowlist check over sensitive argument values; and an LLM judge, invoked only on the residual of actions where the first two checks cannot safely decide between a legitimate new request and a carefully crafted injection. We demonstrate the effectiveness of Agent Sentry in AgentDojo and AgentDyn by blocking 94.3% of successful injections while allowing 95.1% of benign executions, without modifying the agent, its tools, or the LLM.