Poisoning the Inner Prediction Logic of Graph Neural Networks for Clean-Label Backdoor Attacks

Graph neural networks (GNNs) have achieved remarkable success in relational learning. However, their vulnerability to graph backdoor attacks (GBAs) poses a significant barrier to broader adoption in high-stakes applications. Despite recent advances in graph backdoor defense (GBD), existing methods primarily focus on subgraph-based GBAs, relying on the assumption that poisoned target nodes are explicitly connected to subgraph triggers. Our empirical results reveal that such structure-centric approaches fail to defend against emerging feature-based GBAs that preserve graph topology. Therefore, in this paper, we study a novel problem of universal graph backdoor defense. First, we investigate the shared effects of both attack types from a feature-based homophily perspective, which characterizes local feature consistency between nodes and their neighborhoods. Thorough theoretical and empirical analyses demonstrate that, regardless of trigger mechanisms, backdoors induced by GBAs exhibit lower feature-based homophily than clean nodes, indicating a discrepancy in local feature similarity. Motivated by this insight, we propose to leverage node-level local feature consistency, modeled by a neighbor-aware reconstruction loss, to distinguish backdoors from clean nodes. Then, a robust training strategy is developed to eliminate trigger effects while reducing noise induced by detection uncertainty. Extensive experiments demonstrate that our framework significantly degrades the attack success rate and maintains competitive clean accuracy under both subgraph-based and feature-based attacks.

GNNs have become a standard tool for learning on relational data, yet they remain highly vulnerable to backdoor attacks. Prior defenses often depend on inspecting specific subgraph patterns or node features, and thus can be circumvented by adaptive attackers. We propose PRAETORIAN, a new defense that targets intrinsic requirements of effective GNN backdoors rather than surface-level cues. Our key observation is that flipping a victim node's prediction requires substantial influence on the victim: attackers tend to either inject many trigger nodes or rely on a small set of highly influential ones. Building on this observation, PRAETORIAN (i) analyzes internal correlations within potential trigger subgraphs to detect abnormally large injected structures, and (ii) quantifies external node influence to identify triggers with disproportionate impact. Across our evaluations, PRAETORIAN reduces the average attack success rate (ASR) to 0.55% with only a 0.62% drop in clean accuracy (CA), whereas state-of-the-art defenses still yield an average ASR of >20% and a CA drop of >3% under the same conditions. Moreover, PRAETORIAN remains effective against a range of adaptive attacks, forcing adversaries to either inject many trigger nodes to achieve high ASR (>80%), which incurs a >10% CA drop, or preserve CA at the cost of limiting ASR to 18.1%. Overall, PRAETORIAN constrains attackers to an unfavorable trade-off between efficacy and detectability.

Modern graph learning systems often combine links with text, as in citation networks with abstracts or social graphs with user posts. In such systems, text is usually easier to edit than graph structure, which creates a practical security risk: an attacker may hide a small malicious cue in training text and later use it to trigger incorrect predictions. This paper studies that risk in a realistic setting where the attacker edits only node text and leaves the graph unchanged. We propose TAGBD, a graph-aware backdoor attack that first selects training nodes that are easier to manipulate, then generates stealthy poison text with a shadow graph model, and finally injects the text by replacing the original content or appending a short phrase. Experiments on three benchmark datasets show that TAGBD achieves very high attack success rates, transfers across different graph models, and remains effective under common defenses. These results show that inconspicuous poison text alone can serve as a reliable attack channel in text-attributed graphs, highlighting the need for defenses that inspect both node content and graph structure.