Sensitivity-Aware Retrieval-Augmented Intent Clarification

Retrieval-Augmented Generation (RAG) has emerged as a dominant paradigm for enhancing large language models with external knowledge. By coupling retrieval mechanisms with generative models, RAG systems improve factual grounding and adaptability across domains. However, integrating retrieval pipelines introduces new security and privacy risks that extend beyond conventional language modeling threats. Sensitive information may be exposed through retrieval indices, query logs, context construction, or federated updates, while adversarial manipulation of knowledge bases can undermine trust in generated outputs. This survey provides a comprehensive examination of privacy and security challenges across RAG systems deployed in centralized, on-device (Micro-RAG), federated, and hybrid paradigms. We present a unified taxonomy of threat surfaces spanning the retrieval, context construction, and generation stages and systematically analyze attack classes, including membership inference, index inference, poisoning, gradient leakage, and collusion. We further review architectural, algorithmic, and cryptographic defenses, highlighting privacy-utility trade-offs and deployment considerations. Finally, we outline open research challenges toward building trustworthy, secure, and resilient RAG systems for real-world applications.

Retrieval-augmented generation (RAG) improves large language models (LLMs) with external knowledge, but this access path creates security risks distinct from inherent prompt-only or parametric-model flaws. We frame secure RAG as securing external knowledge access. We conducted a systematic search and curated 135 works on attacks, defenses, and security evaluation, and organized them with SLOT: a taxonomy along the attack Surface (S) and the corresponding defense Layer (L), with cross-cutting axes Objective (O) and attack-target scope (T). Mapping these studies onto an external knowledge-access pipeline, we expose three mismatches: target mismatch (T2 attacks outpace T2 defenses and evaluation), stage mismatch (S1 attacks outnumber L1 defenses), and signal mismatch (fluent, retrievable, corpus-fitting S1 attacks challenge anomaly-based L2/L3 defenses). Finally, we discuss directions for more realistic targets, surface-complete defense stacks, standardized evaluation, confidentiality, and multimodal and agentic systems, and release the screening process, selected-paper metadata, and machine-readable SLOT labels at https://github.com/TreeAI-Lab/Awesome-RAG-Security.

Retrieval-Augmented Generation (RAG) mitigates LLM hallucinations but introduces a critical vulnerability: corpus integrity. We present SilentRetrieval, a two-stage data poisoning attack that hijacks RAG systems through adversarially crafted yet fluent documents. Stage 1 uses Coordinated Beam Search, a multi-token joint optimization method with a fluency-similarity objective, to keep a poisoned host document retrievable while constraining perplexity. Stage 2 uses Context-Adaptive Trigger Generation, a lightweight trigger-fusion step driven by a frozen LLM, to integrate manipulation triggers into document content. Under a one-poisoned-document-per-query evaluation with synthetic target answers, SilentRetrieval achieves 84.6%/81.3% HR@10 and 57.5%/54.8% ASR-LLM on Natural Questions and MS MARCO, while maintaining near-benign perplexity. Cross-model evaluation across four target LLMs shows nontrivial effectiveness under a fixed trigger generator, and transfer tests against unseen retrievers, including ColBERT and commercial embedding models, yield 64.7% average HR@10 under the same injected-corpus protocol. In a sampled Wikipedia-scale evaluation, SilentRetrieval retains 74.2% HR@10 at a 0.016% poisoning ratio. Combined retrieval-side and generation-side defenses reduce attack success substantially but incur a latency trade-off. Human evaluation shows substantially lower flag rates than disfluent baselines, while remaining numerically more suspicious than benign content at the current sample size.