cs.LGMar 4, 2026

Residual Stream Analysis of Overfitting And Structural Disruptions

Authors: Quan Liu, Han Zhou, Wenquan Wu, Hua Wu, Sen Su

Organizations: BUPT · Baidu

Abstract

Ensuring that large language models (LLMs) remain both helpful and harmless poses a significant challenge: fine-tuning on repetitive safety datasets, where unsafe prompts are paired with standard refusal templates, often leads to false refusals, in which benign queries are declined. We first quantify this effect, showing that safety data exhibits substantially lower token entropy and 2-gram diversity (0.048) compared to general instruction data. To uncover the root cause, we introduce FlowLens, a stable PCA-based tool for residual-stream geometry analysis, and reveal that higher proportions of safety examples concentrate variance along a few components, reducing representational smoothness and driving false refusals (false refusal rate rises from 63 percent to 84 percent as safety data increases from 0 percent to 40 percent). Guided by these insights, we propose Variance Concentration Loss (VCL), an auxiliary regularizer that penalizes excessive variance concentration in mid-layer residuals. Empirical results demonstrate that VCL reduces false refusals by over 35 percentage points while maintaining or improving performance on general benchmarks such as MMLU and GSM8K.

Figures & tables

Appendix figures & tables7 assets

Supplementary material from the paper’s appendix.

Appendix

Explore similar work

Apr 18, 2026

Please refuse to answer me! Mitigating Over-Refusal in Large Language Models via Adaptive Contrastive Decoding

Safety-aligned large language models (LLMs) often generate refusal responses to harmless queries due to the over-refusal problem. However, existing methods for mitigating over-refusal cannot maintain a low refusal ratio for harmless queries while keeping a high refusal ratio for malicious ones. In this paper, we analyze how system prompts with varying safety levels affect LLM refusal behaviors when facing over-refusal queries. A key observation is that, when LLMs suffer from the over-refusal issue, non-refusal tokens remain present in the next-token candidate list, but the model systematically fails to select them, despite the generation of refusal tokens. Based on this observation, we propose a training-free and model-agnostic approach, Adaptive Contrastive Decoding (AdaCD), to mitigate over-refusal while maintaining LLM safety. First, AdaCD compares the output distributions of the LLM with or without an extreme safety system prompt to refine the refusal token distribution. Second, we introduce an adaptive contrastive decoding strategy that dynamically incorporates or removes the refusal token distribution, adaptively boosting the probability of selecting refusal or non-refusal tokens. Experimental results on five benchmark datasets show that, on average, AdaCD reduces the refusal ratio for over-refusal queries by 10.35%, yet still increases the refusal ratio for malicious queries by 0.13%. Code is available at https://github.com/OutdoorManofML/AdaCD.
Sep 4, 2026

Refuse without Refusal: A Structural Analysis of Safety-Tuning Responses for Reducing False Refusals in Language Models

Striking a balance between helpfulness and safety remains a fundamental challenge in aligning large language models. To achieve this balance, models should refuse harmful queries (e.g., "How do I shoot someone?") while remaining responsive to benign inputs, even those superficially resembling harmful queries (e.g., "Where can I shoot a good photo?"). However, models often struggle to distinguish genuinely harmful queries from benign queries that contain superficially risky language, resulting in false refusals. In this paper, we address the issue by decomposing a response in the safety-tuning dataset into two distinct components: (i) a boilerplate refusal statement and (ii) a rationale explaining the refusal. Our experiments and analyses show that refusal statements impede accurate discrimination between harmful and benign queries by inducing reliance on superficial cues. In contrast, training solely on rationales reduces false refusals while maintaining a comparable level of safety performance. Rationale-Only benefits also appear in our ICL configuration and remain compatible with the evaluated inference-time mitigation methods. The results emphasize the necessity of precisely curated, fine-grained safety supervision datasets and outline directions for constructing aligned agents that better reconcile helpfulness with safety.
Sep 6, 2026

Mitigating LLM Over-Refusal via Dynamic Semantic Routing Calibration

Large language models (LLMs) aligned for safety often suffer from over-refusal, incorrectly rejecting benign yet safety-related instructions. Prior studies primarily attribute this to static representation overlap, largely overlooking the underlying dynamic mechanisms. In this paper, we present the mechanistic analysis of over-refusal through the lens of internal routing conflicts within transformer attention. We discover that a sparse subset of Hypersensitive Safety Heads misfires on Hard-Safe prompts, exhibiting abnormal attention entanglement that forcefully binds harmless target entities to refusal semantics. This triggers a severe, high-entropy routing conflict that deprives target entities of necessary attention. To counteract this, we propose Semantic Routing Calibration (SRC), a lightweight, training-free inference framework. SRC precisely localizes and dynamically suppresses these hypersensitive safety heads at the inference stage. Coupled with a dual-branch logits fusion that acts as a safety regularizer during subsequent decoding, SRC seamlessly restores trustworthy reasoning. Extensive experiments demonstrate that SRC alleviates over-refusal, with intrinsic safety performance preserved as much as feasible.