Enhanced Mycelium of Thought (EMoT): A Bio-Inspired Hierarchical Reasoning Architecture with Strategic Dormancy and Mnemonic Encoding

Chain-of-Thought (CoT) prompting has significantly improved the reasoning capabilities of large language models (LLMs). However, conventional CoT often relies on unstructured, flat reasoning chains that suffer from redundancy and suboptimal performance. In this work, we introduce Hierarchical Chain-of-Thought (Hi-CoT), a structured reasoning paradigm specifically designed to address the challenges of complex, multi-step reasoning. Hi-CoT decomposes the reasoning process into hierarchical substeps by alternating between instructional planning and step-by-step execution. This decomposition enables LLMs to better manage long reasoning horizons and maintain logical coherence. Extensive evaluations across diverse LLMs and mathematical reasoning benchmarks show that Hi-CoT consistently improves average accuracy by 6.2% (up to 61.4% on certain models and tasks) while reducing reasoning trace length by 13.9% compared to CoT. We further show that accuracy and efficiency are maximized when models strictly adhere to the hierarchical structure. Our code is available at https://github.com/XingshuaiHuang/Hi-CoT.

Large language models (LLMs) excel at generating long chains of thought, but long reasoning traces are often verbose and memory-inefficient. In this work, we introduce Structured Thoughts, a framework that organizes reasoning into alternating <try> and <outcome> blocks: <try> captures exploratory scratch work, while <outcome> contains the distilled conclusion of that step. We construct a dataset of structured thoughts by segmenting reasoning traces into <try> blocks and prompting an LLM to summarize each step into its corresponding <outcome>. Fine-tuning pretrained foundation models on this reformatted data produces models that adopt the structured reasoning style, leading to performance gains of up to 8.08% on reasoning benchmarks compared to standard SFT. The explicit structure also enables context pruning: after each <try>/<outcome> pair, the <try> can be pruned, allowing the model to retain conclusions without keeping the full scratch work in the context. A proof-of-concept pruning implementation achieves an average of 85% memory / context savings with an 8.67% performance drop across mathematical tasks.

This paper addresses two limitations of large language models (LLMs) in solving complex problems: (1) their reasoning processes exhibit Bayesian-like stochastic generation, where each token is sampled from a context-dependent probability distribution, leading to inherently random decision trajectories rather than deterministic planning; (2) the reasoning and decision-making mechanisms are statically decoupled, meaning dynamically retrieved domain knowledge fails to dynamically adjust the underlying reasoning strategy. These dual deficiencies result in initial decisions lacking strategic anchoring and reasoning chains often failing to converge on correct solutions, as stochastic generation lacks mechanisms for trajectory correction or knowledge-guided optimization during sequential reasoning. To resolve these issues, we propose a problem-solving method integrated into the LLM's generation process to guide reasoning. This method, compatible with numerous LLMs and featuring reusable solutions, is grounded in a novel Heuristic-Classification-of-Thoughts prompting schema (HCoT). HCoT synergizes the LLM's reasoning ability with a structured problem space via a heuristic classification model that controls the reasoning process and provides reusable abstract solutions. Evaluated on two complex inductive reasoning tasks with ill-defined search spaces, HCoT outperforms existing approaches (e.g., Tree-of-Thoughts and Chain-of-Thoughts prompting) in performance. On the well-structured 24 Game task, HCoT demonstrates significantly higher token efficiency compared to the state-of-the-art Tree-of-Thoughts-Breadth-First-Search. In terms of both accuracy and token usage, HCoT achieves a Pareto frontier balance, offering a strong trade-off between performance and computational cost.