Explaining, Verifying, and Aligning Semantic Hierarchies in Vision-Language Model Embeddings

Vision language models (VLMs) excel at zero-shot visual classification, but their performance on fine-grained tasks and large hierarchical label spaces is understudied. This paper investigates whether structured, tree-based reasoning can enhance VLM performance. We introduce a framework that decomposes classification into interpretable decisions using decision trees and evaluates it on fine-grained (GTSRB) and coarse-grained (CIFAR-10) datasets. Although the model achieves 98.2% accuracy in understanding the tree knowledge, tree-based reasoning consistently underperforms standard zero-shot prompting. We also explore enhancing the tree prompts with LLM-generated classes and image descriptions to improve alignment. The added description enhances the performance of the tree-based and zero-shot methods. Our findings highlight limitations of structured reasoning in visual classification and offer insights for designing more interpretable VLM systems.

As Vision-Language Models are increasingly deployed in safety-critical applications, the trustworthiness of their explanations becomes crucial. Explainable AI (XAI) methods for Vision-Language Models often suffer from semantic hallucination, where attribution maps highlight prominent image regions even when prompted with incorrect text descriptions (e.g., highlighting a dog when prompted ``cat''). Although this problem is widespread, a formal mathematical analysis of XAI methods and CLIP embeddings is largely missing in the literature. We demonstrate that this phenomenon is not specific to a single architecture but is a fundamental consequence of Linear Semantic Leakage in high-dimensional embedding spaces. We propose a unified theoretical framework, Linear Semantic Attribution (LSA), which generalizes across discriminative methods. We introduce OSP, a geometric intervention that utilizes the residual property of OMP to disentangle unique semantic signals from shared concepts. We prove theoretically and demonstrate empirically that OSP minimizes hallucination by orthogonalizing the query vector against distractor concepts, rendering the attribution model blind to shared features while preserving fidelity for correct prompts. Our code is available at: https://github.com/emirhanbilgic/Orthogonal-Semantic-Projection

CLIP-like vision-language models (VLMs) trained with contrastive objectives learn strong global image-text representations, but their Euclidean embeddings and global pooling fail to encode relational structure such as part-whole and parent-child relations. Hyperbolic VLMs address this gap with entailment-based objectives, and text-conditioned variants improve fine-grained alignment through sentence- and phrase-level queries. However, these two lines of work remain separate: hyperbolic VLMs use static image and region features, while query-conditioned methods lack hierarchical geometric structure. We present Hyper3-CLIP, a hierarchy-conditioned hyperbolic VLM that combines global, local, and global-local contrastive learning with query-conditioned visual pooling. To train the model, we construct lightweight query hierarchies from text, comprising full captions, sentence fragments, localized part descriptions, and extracted phrases. Each query conditions the pooling of visual patches, and the resulting representations support image-text, whole-part, and parent-child entailment losses. Query-conditioned pooling is active only during training. Hyper3-CLIP improves R@5 and R@10 retrieval on COCO and Flickr, as well as multi-label classification on VOC and COCO, while remaining competitive on hierarchy metrics. We also audit zero-shot prompt sensitivity under fixed prompt regimes and study the effect of the localized GRIT part budget used during training. Code is available at https://github.com/Hyper3Labs/hyper3-clip.