CRaFT: Circuit-Guided Refusal Feature Selection via Cross-Layer Transcoders

Mechanistic interpretability has emerged as the primary means to understand safety behavior of LLMs. However, existing tools primarily focus on the activating neurons or features of a model. The role of the remaining large set of inactive components is invisible to such methods. This work demonstrates that the inactive set contains safety-critical features that are causally relevant for refusal of harmful prompts. Suppressing such features could turn refusals into compliance, while passing undetected by prevalent interpretability tools. We introduce the Counterfactual Activation Potential (CAP), a metric that quantifies a suppressed feature's latent activation tendency as the product of its encoder alignment (how strongly the input drives it), suppression strength (how strongly active features inhibit it), and safety criticality (how much refusal depends on it). To find suppressed safety features at scale, we propose CAP-guided Safety Feature Discovery (CSFD), a two-stage filtering algorithm that identifies candidate safety features from hundreds of thousands of transcoder features without exhaustive ablation. A significant fraction of trials turn compliant with harmful prompts when a candidate feature is ablated. Under natural jailbreaks, the suppression acting on the highest-CAP features rises 2-4x, and their activation correspondingly falls by up to 80%. Amplifying a feature's suppressors pushes its activation down and raises harmful compliance with prompts related to the suppressed feature, with no such effect for random features. Our experiments span five Gemma, Qwen, and Llama models across various parameter sizes. Our findings indicate that jailbreaks could operate in part by suppressing safety-critical features rather than solely activating harmful ones, and that suppressed features are a necessary complement to activation-focused interpretability of safety behavior.

Jailbreak attacks bypass LLM safety alignment, yet their mechanisms remain poorly understood. We provide evidence that attacks do not comprehensively eliminate safety features, but instead selectively suppress specific attention heads. We identify two functionally differentiated types: Adversarially Compromised Heads (ACHs) concentrated in early layers, which are suppressed under attacks, and Safety-Aligned Heads (SAHs) in mid-layers, which maintain robust activations even when attacks succeed. Ablation studies support the causal role of ACHs and the contribution of SAHs to robust activations: suppressing a small number of ACHs is sufficient to induce jailbreak-like behavior on normally refused inputs, while removing SAHs substantially weakens mid-layer safety activations. Token-level attribution further shows that ACH suppression is driven specifically by attack-template tokens, providing a mechanistic account of why attacks can bypass refusal decisions through ACH suppression while leaving internal safety signals sustained by SAHs -- a phenomenon we term Robust Harmful Features. To validate the practical significance of this robustness, we show that simply reading these persistent activations -- without any training -- yields competitive aggregate detection performance with strong adversarial robustness.

Safety-aligned language models refuse harmful requests through learned refusal behaviors encoded in their internal representations. Recent activation-based jailbreaking methods circumvent these safety mechanisms by applying orthogonal projections to remove refusal directions, but these approaches treat refusal as a one-dimensional phenomenon and ignore the rich distributional structure of model activations. We introduce a principled framework based on optimal transport theory that transforms the entire distribution of harmful activations to match harmless ones. By combining PCA with closed-form Gaussian optimal transport, we achieve efficient computation in high-dimensional representation spaces while preserving essential geometric structure. Across six models (Llama-2, Llama-3.1, Qwen-2.5; 7B-32B parameters), our method achieves up to 11% higher attack success rates than state-of-the-art baselines while maintaining comparable perplexity, demonstrating superior preservation of model capabilities. Critically, we discover that layer-selective intervention (applying optimal transport to 1-2 carefully chosen layers at approximately 40-60% network depth) substantially outperforms full-network interventions, revealing that refusal mechanisms may be localized rather than distributed. Our analysis provides new insights into the geometric structure of safety representations and suggests that current alignment methods may be vulnerable to distributional attacks beyond simple direction removal.