Poisoned Identifiers Survive LLM Deobfuscation: A Case Study on Claude Opus 4.6

Standard accuracy metrics cannot explain why LLMs handle variable tracking but fail on semantically equivalent loops. We study an internal lifecycle of code reasoning in which models first brew the answer, making it linearly recoverable many layers before it becomes self-decodable, and then diverge into one of four resolution outcomes: Resolved, Overprocessed, Misresolved, or Unresolved. Understanding this lifecycle matters because similar task accuracies can mask fundamentally different failure modes that surface-level evaluation cannot detect. We introduce a dual diagnostic framework pairing layer-wise linear probing with Context-Stripped Decoding (CSD) and apply it to six code-reasoning task families across 16 models spanning Qwen, Llama, and DeepSeek architectures. All four outcomes carry substantial mass in every task family: overall Resolved is only 41.5%, with multiple tasks below 30%. Controlled sweeps over structure, depth, and operators expose task-specific failure bottlenecks: Function Call Resolved plunges from 61.1% to 2.5% as call depth increases from one to three. Across architectures and scales, the brewing scaffold remains stable, with normalized brewing duration 24-42% across all 16 models, while resolution success varies with capability. This indicates that the scaffold is a stable empirical regularity across the tested decoder-only Transformer families, whereas resolution success covaries with capability, scale, and training. Code: https://github.com/euyis1019/llm-brewing

Code language models are now trusted collaborators in production workflows for debugging, refactoring, and iterative repair, and every benchmark that evaluates them assumes the instructions they act on are correct. We study what happens when that assumption breaks. We evaluate code language models across four experiments designed to assess whether models resist or obey incorrect instructions in single-pass and iterative repair settings, using the RunBugRun dataset of algorithmic Python problems with deterministic test cases. Our findings reveal a striking behavioral pattern: models correctly identify an incorrect instruction as wrong, then follow it anyway. This compliance unknowingly introduces errors beyond the original bug, and the corrupted code state cannot be recovered through subsequent self-guided iterative repair, which fails to converge across passes. We term this Blind Obedience, characterize the Ghost (Unknown) Errors it introduces, quantify the proportion of cases where semantic corruption proves irrecoverable, and show that extended reasoning cannot reverse it. These findings surface behavioral properties invisible to pass-rate evaluation, with direct consequences for code language models deployed in production settings.

If a language model can recognize code it wrote, it may favor that code as a judge, and instances of one model monitoring each other could collude. We test this zero-shot on current commercial models. Five LLMs generate solutions to MBPP, HumanEval, and DS-1000, seven more to MBPP, and models act as evaluators in four tasks: picking their own solution from a pair, judging whether a single solution is their own, identifying which of two solutions a named model wrote, and judging quality blind. In the single-solution task, balanced accuracy is 49-58% for all 15 model-benchmark combinations, while raw accuracy (38-67%) mostly reflects how readily a model claims authorship. In the pairwise task, accuracy across 14 evaluator-opponent combinations correlates at r=0.93 with how often the evaluator's solution is longer. Attribution to a named model succeeds on some pairs and is consistently inverted on others. A rule-based normalization that strips docstrings, comments, type hints, and local names preserves Pass@1 and leaves ten of twelve re-tested results at chance; the other two follow a length difference it leaves, although a trained classifier still separates most normalized pairs. Claude Haiku's self-preference also disappears. We recommend reporting balanced accuracy, heuristic baselines, and label consistency.