Independent-Component-Based Encoding Models of Brain Activity During Story Comprehension

Language-model representations provide structured, high-dimensional annotations of naturalistic language stimuli and can serve as informative neural predictors during comprehension. We analyzed locked derived data from Brain Treebank, MEG-MASC, and Podcast ECoG with eight frozen language models, blocked encoding models, and matched temporal, nuisance, and representation-capacity controls. Positive held-out prediction and gains over low-level baselines were widespread in source-level summaries. Across Brain Treebank and Podcast ECoG, 67 of 432 evaluable rows met a controlled predictive-only criterion, and model-side feature ablations changed prediction scores in most evaluable source rows. Brain-derived, timing-linked, acoustic, and implanted-signal controls confirmed component-level sensitivity of the analysis pipeline. These findings show that language-model-derived quantities can annotate neural activity during natural speech and text comprehension. Participant-level matched-control advantages were localized rather than uniform, response-profile and feature-specificity contrasts bounded representational or computational interpretations, and complete co-indexed integrated interpretation will require future jointly indexed coverage. Together, the analyses identify language-model features as useful neural predictors and separate predictive usefulness from claims about shared neural organization or language-processing computations.

Recent progress in task-optimized neural networks has established encoding models as a powerful tool for predicting brain responses to naturalistic stimuli, yet most existing approaches rely on unimodal representations. The emergence of omni-modal foundation models and rich multimodal neural datasets enables encoding models that jointly integrate visual, auditory, and linguistic information across subjects. We introduce MIRAGE, a brain encoding framework for predicting whole-brain fMRI responses to naturalistic audiovisual stimuli. MIRAGE achieves state-of-the-art performance via a native multimodal backbone and adaptive feature gating across layers. These representations are then combined with a transformer-based brain encoder and a subject-specific linear head over the cortical parcels. Controlled comparisons show that natively multimodal features consistently outperform post-hoc aggregation of independent unimodal features, across architectural levels and backbones. Beyond predictive accuracy, the learned attention weights are directly inspectable to interpret the modality-specific gating profile over the backbone, and each modality traces a distinct anatomical pattern across cortex. Together, these results propose adaptive layer-wise aggregation of natively multimodal features as a generalizable, interpretable, and accurate approach for whole-brain encoding.

A central goal of cognitive neuroscience is to characterize the features that are represented by human language cortex. Artificial language models (LMs) have emerged as a powerful tool to address this challenge, but studies relating biological and artificial representations are often criticized as relating one black box to another. The present work introduces Augmented Sparse Encoding Models, an encoding framework that replaces dense LM hidden states with hierarchically-organized sparse autoencoder (SAE) features, while explicitly including surprisal as a predictor. Using this approach, we (i) produce interpretations of neural responses and (ii) test whether model-brain alignment reflects primary or idiosyncratic variation in LM representations. Using a high-field 7T fMRI dataset of eight participants listening to 200 linguistically diverse sentences, we first validate our modeling framework by recovering previous interpretations of voxel populations tuned to processing difficulty and meaning abstractness. We then interpret a previously-uncharacterized (but reliable) voxel population and find that it is tuned to people-related content. Next, we show that the fronto-temporal human language network is predicted by a common set of features across its constituent regions, but find that frontal regions are relatively well-explained by surprisal alone, even in the absence of LM-based features. Finally, we show that brain responses during language processing are not merely predictable from an arbitrary set of LM features. Rather, brain responses are best explained by the features that tend to capture the most general information encoded in LM representations, suggesting a nontrivial correspondence between brain and LM language representation.