PerFlow: Physics-Embedded Rectified Flow for Efficient Reconstruction and Uncertainty Quantification of Spatiotemporal Dynamics

Reconstructing PDE solutions from sparse observations is a core challenge in scientific computing. We present FM4PDE, a flow-matching generative framework that learns the joint distribution of PDE coefficients (or initial states) and solutions (or final states), enabling both forward simulation and inverse recovery with limited paired data. At inference, sampling is guided by a composite loss that enforces agreement with sparse measurements and reduces the PDE residual; we support deterministic, stochastic, and hybrid samplers. We provide error guarantees for these guided procedures. For the deterministic optimizer, a coercivity condition ensures trajectory boundedness and a phase-wise contraction yields logarithmic complexity in the target accuracy. For the stochastic sampler, we introduce adaptive guidance and assume dissipativity of the velocity field to obtain uniform moment bounds independent of the noise-floor parameter. This leads to polynomial-time error bounds, and a matching lower bound shows constant guidance induces an unavoidable positive bias, motivating adaptivity. A hybrid deterministic-stochastic analysis is also provided. Experiments on static and time-dependent benchmark PDEs demonstrate competitive accuracy and faster inference than diffusion-based generative models.

Generative modeling provides a powerful framework for learning data distributions. These models initially relied on probabilistic methods such as Gaussian Processes (GP) for uncertainty-aware predictions and shifted towards larger trainable models to learn more complex distributions. In this work, we introduce Random Process (RP) Flow, a Flow Matching-based framework that represents the vector field as a neural implicit function. Unlike modern generative methods, our setting involves a single observed field, from which only sparse measurements are available. RP Flow uses Random Fourier Features to learn an implicit signal representation that can be queried at any arbitrary location from a limited set of observations, while encoding uncertainty through ensemble sampling. We propose constructing a Bayesian posterior by GP regression in the source space to generate high-quality samples. Our empirical results demonstrate that this framework generates realistic samples along with calibrated uncertainty estimates, even under challenging conditions such as high frequency, high sparsity, or high dimensionality. These findings position RP Flow as a milestone towards generative models for reconstruction tasks where data is scarce and uncertainty must remain traceable.

Reconstructing high-fidelity flow fields from low-fidelity observations is a central problem in scientific machine learning, yet recent diffusion and flow-matching models typically rely on iterative sampling, making them costly for latency-sensitive workflows such as ensemble forecasting, real-time visualization, and simulation-in-the-loop inference. We study whether a high-fidelity flow-matching generative model can be compressed into a compact one-step model for fast scientific flow reconstruction. Our approach distills an optimal-transport flow-matching teacher into a one-step consistency model. Low-fidelity observations are incorporated at inference by initializing the generative trajectory from a noised observation along the transport path, allowing an unconditional high-fidelity flow model to perform conditional reconstruction without retraining the teacher. We evaluate this distillation strategy on three fluid benchmarks, Smoke Buoyancy, Turbulent Channel Flow, and Kolmogorov Flow, using coarse-to-fine reconstruction as a controlled testbed at field sizes up to $256 \times 256$. Across these settings, the distilled student retains similar performance of the teacher's model on spectrum metrics, while using roughly half as many parameters and achieving a $12\times$ inference speedup over the flow-matching teacher. Under the same training budget, the distilled student also outperforms a one-step consistency model trained directly from scratch by $23.1\%$ in SSIM, showing that teacher distillation improves training efficiency rather than merely accelerating sampling. These results suggest a promising route for turning future high-capacity scientific generative models into compact reconstruction models that are faster to train, cheaper to run, and easier to deploy.