PlotPick: AI-powered batch extraction of numerical data from scientific figures

Scientific figures are the interface through which research claims are inspected and reused, but final published panels rarely expose the data or plotting code that produced them. Recovering this hidden provenance from pixels is therefore underdetermined. We introduce SciFigure2Code, an AI-reconstructed benchmark that instead evaluates presentation recovery: generating editable Python programs that preserve how a scientific panel is arranged and read. Role-specialized Codex agents generate, execute, visually refine, and audit silver-standard presentation programs that capture geometry, visual hierarchy, encodings, annotations, and typography without claiming to recover original measurements or author source code. This reconstruction-and-audit protocol turns final published panels into auditable reference packages; the resulting resource contains 6,740 reviewed panels and SciFigureBench, a balanced 337-panel test set across 31 chart subtypes, five domains, and three complexity levels. Across 14 zero-shot models in image-only and caption-assisted settings, execution, multi-component layouts, axes, legends, and scientific labels remain weak. Claude Opus 4.7 achieves the highest image-only Overall score, Claude Opus 4.6 leads caption-assisted reconstruction, and two-stage plan-then-code prompting improves Overall for all four tested models. SciFigure2Code provides an auditable testbed for agents that construct editable, visually faithful scientific figure presentations.

Charts effectively convey quantitative information, but the underlying data are often locked in image form, hindering reuse and analysis. Manually digitizing charts is time-consuming and error-prone, motivating automatic chart-to-table extraction. Recent approaches use specialized vision-language models (VLMs), yet performance still lags on charts with many datapoints or substantial stylistic variation. We propose a VLM self-ensembling method that repeatedly samples multiple tabular outputs from the same VLM for a fixed chart image and aggregates them at the level of individual table cells. We align candidate tables and take per-cell medians over numerical values to produce a more accurate consensus table. Our method also includes convergence detection to stop sampling once the aggregated table stabilizes, and uncertainty estimation based on dispersion across samples to help users assess extraction reliability. Because existing chart extraction benchmarks contain relatively simple plots with limited room for improvement, we introduce WB-ChartExtract, a new benchmark built from World Bank data with more complex and stylistically diverse charts; on average, its charts contain 7 times more datapoints than those in the ChartQA benchmark. Across both ChartQA and WB-ChartExtract, our approach improves extraction accuracy over single-pass VLM outputs, yielding up to 23% relative improvement on WB-ChartExtract after ensembling. More broadly, our method helps unlock tabular data previously siloed in chart images, enabling downstream analysis and reuse.

Automated extraction of materials composition-property data from scientific literature has advanced considerably with the development of large language model-based pipelines; however, existing frameworks remain limited to textual and tabular content, overlooking the substantial proportion of quantitative property data reported exclusively in scientific figures. Here, we extend ComProScanner, a fully end-to-end multi-agent framework for automated composition-property database construction, with a native vision-language model (VLM) based figure extraction capability. The extension introduces a FigureExtractor utility for caption-keyword-based figure filtering across all supported publishers, and a GraphExtractorTool agent that passes extracted figures to a configurable VLM to recover composition-property pairs from scientific charts and plots. Four VLMs are selected for evaluation on the basis of the LMArena Diagram leaderboard with an input cost criterion of less than $1.50 per million tokens. Benchmarking on 50 piezoelectric ceramic articles from the established $d_{33}$ test corpus demonstrates that Gemini-3-Flash-Preview achieves the highest performance with a composition accuracy of 0.97 and a normalised F1 score of 0.97, whilst remaining the most cost-effective model among the four evaluated. We additionally introduce a range-based value error threshold parameter into the evaluation framework, providing a more physically meaningful assessment of numeric property values extracted from figures than exact value matching. These contributions establish VLM-integrated ComProScanner as the first materials-specific, fully automated, multimodal literature mining platform capable of extracting structured composition-property data from text, tables, and figures within a single unified pipeline.