Organizations: Institute of Artificial Intelligence · Institute of Theoretical Chemistry · University of Stuttgart
Abstract
Generative modeling of physical systems, such as molecules, requires learning distributions that are invariant under global symmetries, such as rotations in three-dimensional space. Equivariant diffusion and flow matching models can incorporate such invariances effectively, even when trained on a non-invariant empirical distribution, but they typically rely on costly multi-step sampling. Recently, drifting models have emerged as an efficient alternative, enabling single-step generation and achieving state-of-the-art performance in generative modeling tasks. However, we show that drifting models face a symmetry-specific challenge, since an equivariant generator does not generally produce the same drifting field as the one obtained from the symmetrized target distribution. Addressing this issue would require expensive symmetrization of the empirical distribution. To avoid this cost, we propose SymDrift, a framework that makes the drifting field itself symmetry-aware. We introduce two complementary strategies: (i) a symmetrized drift in coordinate space based on optimal alignment, and (ii) a G-invariant embedding that removes symmetry ambiguity by construction. Empirically, SymDrift outperforms existing one-shot methods on standard benchmarks for conformer and transition state generation, while remaining competitive with significantly more expensive multi-step approaches. By enabling one-shot inference, SymDrift reduces computational overhead by up to 40× compared to existing baselines, making it promising for high-throughput applications such as virtual drug screening and large-scale reaction network exploration.
Diffusion-based generative models have reformed generative AI, and also enabled new capabilities in the science domain, e.g., fast generation of 3D structures of molecules. In such tasks, there is often a symmetry in the system, identifying elements that can be converted by certain transformations as equivalent. Equivariant diffusion models guarantee a symmetric distribution, but miss the opportunity to make learning easier, while alignment-based simplification attempts fail to preserve the target distribution. In this work, we develop quotient-space diffusion models, a principled generative framework to fully handle and leverage symmetry. By viewing the intrinsic generation process on the quotient space, the exact construction that removes symmetry redundancy, the framework simplifies learning by allowing model output to have an arbitrary intra-equivalence-class movement, while generating the correct symmetric target distribution with guarantee. We instantiate the framework for molecular structure generation which follows SE(3) (rigid-body movement) symmetry. It improves the performance over equivariant diffusion models and outperforms alignment-based methods universally for small molecules and proteins, representing a new framework that surpasses previous symmetry treatments in generative models.
Iterative generative models such as Flow Matching and Diffusion models have demonstrated strong test-time scaling behavior, where additional inference computation can improve generation quality. In contrast, Drift Models offer efficient one-step generation, but their direct generation paradigm limits such flexibility. In this work, we propose Drift Flow Matching (DFM), a framework that connects drifting generative modeling with flow-based iterative generation. DFM preserves the efficiency of direct transport maps while enabling generation to be refined through multiple inference steps when desired. This bridges the gap between one-step Drift Models and multi-step Flow Matching methods, and provides a novel generative paradigm that can adapt sampling computation to different quality--efficiency requirements. Extensive experiments across different tasks and datasets demonstrate the effectiveness and generality of the proposed framework.
Drifting Models have emerged as a new paradigm for one-step generative modeling, achieving strong image quality without iterative inference. The premise is to replace the iterative denoising process in diffusion models with a single evaluation of a generator. However, this creates a different trade-off: drifting reduces inference cost by moving much of the computation into training. We introduce DriftXpress, an accelerated formulation of drifting models based on projected RKHS fields. DriftXpress approximates the drifting kernel in a low-rank feature space. This preserves the attraction-repulsion structure of the original drifting field while reducing the cost of field evaluation. Across image-generation benchmarks, DriftXpress achieves comparable FID to standard drifting while reducing wall-clock training cost. These results show that the training-inference trade-off of drifting models can be pushed further without giving up their one-step inference advantage.