Beyond Rigid Alignment: Graph Federated Learning via Dual Manifold Calibration
Authors: Wentao Yu, Bo Han, Jie Yang, Chen Gong
Abstract
Graph Federated Learning (GFL) enables collaborative representation learning across distributed subgraphs while preserving privacy. However, heterogeneity remains a critical challenge, as subgraphs across clients typically differ significantly in both semantics and structures. Existing methods address heterogeneity by enforcing the rigid alignment of model parameters or prototypes between clients and the server. However, these alignments implicitly rely on a restrictive global linearity assumption that summarizes local data distributions using a single and globally consistent representation space. This severely compresses the personalized representation space of clients and fails to preserve diverse local graph distributions. To overcome these limitations, we propose Federated Graph Manifold Calibration (FedGMC), a novel paradigm that tackles semantic heterogeneity and structural heterogeneity from a unified manifold perspective. Instead of enforcing rigid alignment, FedGMC introduces a dual manifold calibration mechanism that preserves global commonalities while maximizing the personalized representation space of local clients. Specifically, for semantic heterogeneity, the server constructs a geometrically optimal semantic manifold via equidistant semantic anchors, so as to guide the calibration of local semantic manifolds. For structural heterogeneity, the server constructs a global structural manifold by building global structural templates, so as to guide the calibration of local structural manifolds. Finally, the server dynamically refines both global semantic manifolds and structural manifolds by aggregating local manifolds. Extensive experiments on eleven homophilic and heterophilic graphs demonstrate that FedGMC effectively balances global commonality and local personalization, thereby significantly outperforming state-of-the-art baseline methods.
Federated Graph Learning (FGL) enables collaborative learning over distributed graph data, yet existing approaches largely rely on a closed-world assumption, limiting their applicability in dynamic environments where novel categories continuously emerge. To bridge this gap, we target the practical scenario of Federated Graph Generalized Category Discovery (FGGCD), aiming to collaboratively discover novel categories across decentralized graph clients while retaining knowledge of known categories. We observe that FGGCD introduces two fundamental challenges: (1) the Neighborhood Absorption Effect, where structural fragmentation leads to biased neighborhood aggregation, causing novel nodes to be misclassified as known categories; and (2) Global Semantic Inconsistency, where the aforementioned local biases propagate to the server and are amplified by heterogeneous subgraph distributions, hindering cross-client knowledge integration. To address these issues, we propose GCD-FGL, an FGL framework for GCD that integrates a client-side Topology-Reliable Semantic Alignment and Discovery process to mitigate the neighborhood absorption effect, and a server-side Hierarchical Prototype Alignment strategy to resolve global semantic inconsistency. Extensive experiments on five real-world graph datasets demonstrate that GCD-FGL consistently outperforms state-of-the-art baselines, achieving an average absolute gain of +4.86 in HRScore.
Federated graph learning (FGL) enables collaborative training on graph data across multiple clients. As graph data increasingly contain multimodal node attributes such as text and images, multimodal federated graph learning (MM-FGL) has become an important yet substantially harder setting. The key challenge is that clients from different modality domains may not share a common semantic space: even for the same concept, their local encoders can produce inconsistent representations before collaboration begins. This makes direct parameter coordination unreliable and further causes two downstream problems: forcing heterogeneous client representations into a naively shared semantic space may create false semantic agreement, and graph message passing may amplify residual inconsistency across neighborhoods. To address this issue, we propose \textbf{STAGE}, a protocol-first framework for MM-FGL. Instead of relying on direct parameter averaging, STAGE builds a shared semantic space that first translates heterogeneous multimodal features into comparable representations and then regulates how these representations propagate over local graph structures. In this way, STAGE not only improves cross-client semantic calibration, but also reduces the risk of inconsistency amplification during graph learning. Extensive experiments on 8 multimodal-attributed graphs across 5 graph-centric and modality-centric tasks show that STAGE consistently achieves state-of-the-art performance while reducing per-round communication payload.
Multimodal-attributed graphs (MAGs), where nodes carry heterogeneous semantic content across multiple modalities while edges encode relational dependencies, have been widely adopted across diverse domains. Federated multimodal graph learning (FMGL) extends federated graph learning (FGL) to MAGs, enabling collaborative optimization across decentralized MAGs without exposing raw data. However, naively applying existing FGL methods to FMGL is insufficient, as they fail to navigate the multifaceted heterogeneity inherent in decentralized MAGs, including task heterogeneity across diverse client objectives, modality heterogeneity from discrepant modality quality and semantic domains, and topology heterogeneity arising from divergent topological patterns with low cross-modality correlation. To address these challenges, we propose Federated multimodal graph learning with Topology-aware Cross-modal Routing (FedTCR), the first systematic algorithm designed for FMGL. To handle task heterogeneity, FedTCR employs a two-stage paradigm that comprises federated task-agnostic pre-training followed by isolated task-oriented fine-tuning. To jointly address modality and topology heterogeneity, FedTCR introduces a topology-aware cross-modal routing mechanism. Concretely, each client distills modality-specific knowledge into compact prototypes via topology-aware importance-weighted aggregation informed by graph structure; the server then evaluates cross-client cross-modal relationships among these structure-informed prototypes and routes informative ones as contrastive references, driving a tri-level cross-modal contrastive learning scheme that jointly aligns cross-client modalities while preserving discrimination. Experiments across 7 domains demonstrate that FedTCR outperforms state-of-the-art baselines on both graph-centric and modality-centric tasks.