Organizations: Delft University of Technology, Department of Software Technology Van Mourik Broekmanweg 6, 2628 XE Delft, The Netherlands
Abstract
Subgraph pattern detection aims to uncover complex interaction structures in graphs. However, state-of-the-art graph neural network (GNN)-based solutions assume centralized access to the entire graph. When graphs are instead distributed across multiple parties, client-local GNN computations diverge from those of a centralized model, resulting in a representation-equivalence gap. We formalize this as a structural observability problem, where subgraph patterns crossing partition boundaries become locally unidentifiable. To bridge this gap, we propose a per-step, layer-wise embedding exchange framework in which clients synchronize intermediate node representations at each layer of the forward pass, without exposing raw features or labels. Under an extended-subgraph assumption and shared model parameters across clients, this framework recovers the same node representations as a centralized GNN over the full graph. Experiments on synthetic directed multigraphs with cycles, bicliques, and scatter-gather patterns show that embedding exchange and federated parameter aggregation are complementary rather than interchangeable: their combination recovers most of the representation gap, provided exchanged embeddings are fresh per-step rather than stale per-epoch.
Graph neural networks (GNNs) achieve strong performance on relational data, but real-world graphs are often distributed across organizations that cannot share raw data due to privacy and policy constraints. Existing federated GNN methods either ignore cross-client links, leading to degraded accuracy, or require frequent embedding exchanges, incurring substantial communication and privacy costs. We propose CE-FedGNN, a communication-efficient and privacy-preserving federated GNN framework for learning over such coupled graphs. Our approach avoids sharing raw data or per-round embeddings by infrequently exchanging aggregated node representations. To handle cross-client dependency and staleness, we introduce a moving-average estimator that continuously tracks node representations and enables their stable reuse across rounds. To provide formal privacy guarantees for the released representations, we adopt the metric differential privacy (metric-DP) framework, which measures privacy with respect to distances in the learned embedding space rather than worst-case input perturbations. This yields meaningful guarantees at noise levels where standard differential privacy becomes overly conservative. We establish convergence to a stationary point at a rate of O(1/T) with O(T3/4) communication complexity. In addition, we derive (ε,δ)-metric-DP guarantees via Rényi differential privacy composition under a public-cohort threat model. Experiments on synthetic interbank anti-money laundering benchmarks and citation networks demonstrate that CE-FedGNN achieves strong performance while significantly reducing communication and maintaining robustness under privacy-preserving noise.
Federated graph learning (FGL) is a natural paradigm for social-media user graphs, where language communities, regional markets, and service boundaries can prevent raw graph pooling. We use the Twitch Gamers networks as the primary live-streaming social-media benchmark, and study a question that is often hidden by representation-level evaluation: after local message passing, what update signals are actually exposed to server aggregation? Through update-space measurements, we identify an aggregation-level failure in which graph-domain clients gradually place salient update signals on less shared parameter coordinates, while message-passing backbones show weaker cross-domain directional compatibility than an MLP control. This update-support fragmentation means that standard averaging can dilute locally important coordinates even when no raw graph data are exchanged. Across five backbones, homophily remains relevant but is not the dominant correlate of support retention; feature, label, and degree discrepancies show stronger associations. These findings indicate that graph-domain shifts damage not only local representations, but also the coordinate support on which aggregation operates. Motivated by this diagnosis, we propose FedIA, a plug-and-play server-side importance-aware aggregation method. Importance Masking selects a shared high-magnitude coordinate support, and Contribution-Aware Momentum Weighting smooths client contributions within that support. FedIA requires no raw graph sharing, no graph-statistics upload, and no auxiliary communication payload, while adding only O(D+N) persistent server state for D model coordinates and N clients.
Federated Graph Learning (FGL) enables collaborative learning over distributed graph data, yet existing approaches largely rely on a closed-world assumption, limiting their applicability in dynamic environments where novel categories continuously emerge. To bridge this gap, we target the practical scenario of Federated Graph Generalized Category Discovery (FGGCD), aiming to collaboratively discover novel categories across decentralized graph clients while retaining knowledge of known categories. We observe that FGGCD introduces two fundamental challenges: (1) the Neighborhood Absorption Effect, where structural fragmentation leads to biased neighborhood aggregation, causing novel nodes to be misclassified as known categories; and (2) Global Semantic Inconsistency, where the aforementioned local biases propagate to the server and are amplified by heterogeneous subgraph distributions, hindering cross-client knowledge integration. To address these issues, we propose GCD-FGL, an FGL framework for GCD that integrates a client-side Topology-Reliable Semantic Alignment and Discovery process to mitigate the neighborhood absorption effect, and a server-side Hierarchical Prototype Alignment strategy to resolve global semantic inconsistency. Extensive experiments on five real-world graph datasets demonstrate that GCD-FGL consistently outperforms state-of-the-art baselines, achieving an average absolute gain of +4.86 in HRScore.