Layer pruning removes entire Transformer decoder blocks from large language models, but introduces a mismatch between the hidden state received by the next surviving layer and the distribution it was trained to process, leading to significant performance degradation. We propose Ghosted Layers, a training-free recovery module that addresses this issue by solving a boundary activation alignment problem. Our method derives a closed-form optimal linear operator from a small calibration set to reconstruct the activation discrepancy introduced by the pruned layers. We show that this solution corresponds to the unconstrained optimum of the alignment objective, whereas existing methods are restricted to constrained solutions over limited operator subspaces. Experiments across multiple LLM backbones and pruning strategies demonstrate that our method consistently improves accuracy and perplexity over prior training-free baselines, while preserving the efficiency gains of layer pruning. Official code repository: https://github.com/daniel-eai/ghosted_layers_official_repository/.
One-shot pruning methods like Wanda and SparseGPT apply the same sparsity ratio to every layer of a transformer, ignoring known variation in layer importance. We propose PALS (Percentile-Aware Layerwise Sparsity), which adjusts per-layer sparsity based on the 99th percentile of activation magnitudes, bounded to ±5% around the target ratio. On LLaMA-2-7B at 50% sparsity, PALS achieves 10.96 WikiText-2 perplexity versus 12.92 for uniform Wanda (mean over 9 runs, p<0.001). The benefit is architecture-dependent: LLaMA-3-8B shows marginal gains and Mistral-7B shows none. We also find that gradient-based allocation -- the seemingly more principled approach -- produces results worse than random, suggesting that gradient magnitude does not predict the impact of discrete weight removal. PALS adds negligible cost to the pruning pipeline and requires no fine-tuning.
Depth pruning reduces large language model (LLM) inference cost by removing complete Transformer blocks. Activation-based methods collect hidden states through forward passes on calibration data, while existing forward-free methods score each Transformer block separately without measuring similarity between blocks. We propose Weight-Redundancy Pruning (WRP), a forward-free depth-pruning method that estimates inter-layer redundancy from checkpoint weights to select blocks without calibration data or model forward passes. WRP compares attention output and MLP down-projection weights across layers and combines their pairwise similarities with relative projection-scale information. The resulting all-pairs similarity matrix guides layer grouping and block selection. Across multiple pruning settings, model families, and downstream tasks, WRP consistently outperforms existing forward-free magnitude pruning and approaches the performance of activation-based methods.
When researchers ask whether two transformer layers are "equivalent" for compression, they often conflate distinct tests. Replacement asks whether one layer's map can substitute for another's in place; interchange asks whether two layers approximately commute when their positions are swapped. Both are output-grounded swap-KL probes, but they need not agree: on pretrained transformers the protocol gap can change which layers look safe to prune by several-fold under the same evaluator, especially when replacement distances are high. We measure both protocols across checkpoints and architectures. On a Pythia training trajectory (410M and 1.4B), the replacement-interchange gap grows from initialization to convergence. Under one matched WikiText-2 contract at 8B scale, Qwen3-8B enters a divergent regime: interchange-guided removal is several-fold safer than replacement-guided at the same layer budgets, while Llama-3.1-8B ties the two protocols for pruning cost even though interchange KL is lower, showing metric gaps need not map one-to-one to removal. Before layer removal or merging, score both swap-KLs on the target checkpoint; the diagnostic requires only unlabeled forward passes.