Large language models (LLMs) have demonstrated impressive reasoning abilities across a wide range of tasks, but data contamination undermines the objective evaluation of these capabilities. This problem is further exacerbated by malicious model publishers who use evasive, or indirect, contamination strategies, such as paraphrasing benchmark data to evade existing detection methods and artificially boost leaderboard performance. Current approaches struggle to reliably detect such stealthy contamination. In this work, we uncover a critical phenomenon: a model's generated reasoning steps actively mask its underlying memorization. Inspired by this, we propose the Zero-CoT Probe (ZCP), a novel black-box detection method that deliberately truncates the entire Chain-of-Thought (CoT) process to expose latent shortcut mappings. To further isolate memorization from the model's intrinsic problem-solving capabilities, ZCP compares the model's zero-CoT performance on the original benchmark against an isomorphically perturbed reference dataset. Furthermore, we introduce Contamination Confidence, a metric that quantifies both the likelihood and severity of contamination, moving beyond simple binary classifications. Extensive experiments on both previously identified contaminated models and specially fine-tuned contaminated models demonstrate that ZCP robustly detects both direct and evasive data contamination. The code for ZCP is accessible at https://github.com/Yifan-Lan/zero-cot-probe.
Reinforcement learning (RL) post-training has shown to improve reasoning in large language models (LLMs). However, there has been little exploration on the problem of data contamination in RL post-training, potentially undermining generalization and evaluation reliability of the training process itself. Existing detection methods primarily rely on output-level signals such as likelihood or entropy, which become unreliable for RL-trained models since RL shapes behavior through trajectory-level rewards rather than token likelihoods. We propose LaRA, a layer-wise representation analysis framework for detecting contamination in RL post-trained LLMs. LaRA introduces three complementary metrics, measuring perturbation sensitivity, directional collapse, and local representation rigidity under controlled perturbations. We find that contamination produces progressive geometric deviations across layers, including amplified perturbation sensitivity, stronger directional collapse, and enhanced local rigidity. Based on our findings, we also develop a contamination detection protocol that aggregates representation-level deviations across layers and metrics. Experiments on RL-trained reasoning models show that our protocol outperforms existing output-level baselines for contamination detection.
Data contamination is a known threat to the reliability of model evaluation. However, it remains underexplored in code large language models (LLMs), where contamination often goes beyond exact duplication. We present TRACER, a semantic-aware framework for fine-grained code contamination detection. TRACER models contamination using three levels of semantic overlap - Functionally Identical, Nearly Identical, and Shared Logic - and detects them through a coarse-to-fine pipeline. We also introduce the first benchmark for fine-grained code contamination detection, spanning three widely used benchmarks and three representative post-training datasets. TRACER achieves strong and consistent performance across multiple LLM backbones, with GPT-5 reaching an F1 score of 0.91 in fine-grained detection. In the binary setting, TRACER attains an F1 of 0.92, outperforming existing methods by 42%-217%. We further conduct ablation studies and error analysis to assess the contributions of individual components in TRACER.
Adversaries can implant latent harmful behavior by poisoning as few as 1% of fine-tuning examples. The contamination is invisible to every output-level defense: harmful behavior lies dormant in the model's hidden-state geometry and does not appear in generated text until contamination exceeds 7.5%. We introduce CANARY (Contamination Auditor via Neural Activation Representation Yield), a zero-label checkpoint auditor that detects this hidden shift directly from two forward passes over an unlabeled prompt set. CANARY projects the hidden-state difference through a Sparse Autoencoder, filtering style noise to isolate meaningful semantic drift. It achieves AUROC = 1.000 at 1% contamination (95% CI = [0.997, 1.000]; Cohen's d = 3.28) across four model architectures and two training paradigms, 7.5x below where any output-level method fires, with zero false positives on benign fine-tuning and full robustness to style-matching and gradient-noise adaptive attacks. The same SAE feature basis drives a complete governance pipeline: SAE-filtered amplification surfaces latent harm at a 5x higher rate than standard generation; score-ranked prompts yield 4.2x red-teaming lift; and suppressing a handful of contamination-specific features at inference time reduces harm from 70% to 10% with no perplexity penalty. CANARY is the first zero-label framework to detect, verify, prioritize, and remediate supply-chain contamination from hidden states alone.