Learning Permutation from Structure Without Supervision
Authors: Ran Eisenberg, Ofir Lindenbaum
Organizations: Faculty of Engineering, Bar-Ilan University, Ramat Gan, Israel. · Faculty of Engineering, Bar-Ilan
Abstract
Many learning problems require uncovering a hidden ordering that reveals structure in unordered data, such as monotonicity in sorting or spatial continuity in jigsaw reconstruction. In these settings, permutations can be learned as latent operators by optimizing objectives defined directly on the reordered output, often without access to ground-truth orderings. Differentiable relaxations such as Gumbel-Sinkhorn make this approach practical by approximating permutation matrices with doubly stochastic matrices. However, learning from structure without supervision induces a non-uniform uncertainty: some assignments become confident early, while others remain ambiguous. Existing methods control this process using a single global temperature, forcing all assignments to sharpen or diffuse simultaneously and leading to instability at scale. We introduce an entropy-adaptive formulation of Gumbel-Sinkhorn that locally modulates temperature based on assignment uncertainty. This allows confident assignments to discretize early while preserving exploration where uncertainty remains. Across sorting and jigsaw reconstruction tasks and in routing-style settings, adaptive entropy control improves training stability and final permutation quality relative to fixed-temperature baselines, particularly as problem size and assignment ambiguity increase.
Learning permutations is fundamental to sorting, ranking, and matching, but existing differentiable methods based on entropy-regularized Sinkhorn produce a single softened solution and collapse under ambiguity. We present PermFlow, a conditional flow matching framework that operates directly on the affine subspace of matrices with unit row and column sums. A closed-form tangent-space projector preserves these constraints exactly along every trajectory, by construction rather than through iterative correction, and a nearest-target coupling routes distinct noisy initializations toward distinct valid permutations. The result is a model that captures multimodal permutation distributions rather than collapsing them to a single mode. On a visual sorting task with blended-digit ambiguity and a symmetric linear assignment problem, PermFlow achieves high accuracy on unambiguous inputs and recovers both valid permutations under ambiguity, where Sinkhorn-based baselines structurally fail.
Sorting and permutation learning are key concepts in optimization and machine learning, especially when organizing high-dimensional data into meaningful spatial layouts. The Gumbel-Sinkhorn method, while effective, requires N*N parameters to determine a full permutation matrix, making it computationally expensive for large datasets. Low-rank matrix factorization approximations reduce memory requirements to 2NM (with M << N), but they still struggle with very large problems. SoftSort, by providing a continuous relaxation of the argsort operator, allows differentiable 1D sorting, but it faces challenges with multidimensional data and complex permutations. In this paper, we present a novel method for learning permutations using only N parameters, which dramatically reduces storage costs. Our method extends SoftSort by iteratively shuffling the N indices of the elements and applying a few SoftSort optimization steps per iteration. This modification significantly improves sorting quality, especially for multidimensional data and complex optimization criteria, and outperforms pure SoftSort. Our method offers improved memory efficiency and scalability compared to existing approaches, while maintaining high-quality permutation learning. Its dramatically reduced memory requirements make it particularly well-suited for large-scale optimization tasks, such as "Self-Organizing Gaussians", where efficient and scalable permutation learning is critical.
Rank estimation under label noise poses a fundamental challenge, as ordinal annotations often exhibit structured uncertainty rather than simple label corruption. In this paper, we reformulate rank estimation with noisy ordinal labels as a stochastic ordering problem, in which each instance is inherently associated with multiple plausible ranks instead of a single deterministic label. Based on this view, we propose stochastic order learning (SOL), a learning framework that captures ordinal label uncertainty and learns an embedding space through two complementary objectives: a discriminative loss that structures instance--centroid interactions and a stochastic order loss that enforces probabilistic ordering relations between instances. Extensive experiments across diverse datasets demonstrate that SOL enables reliable rank estimation under various types and levels of label noise. The source code is available at https://github.com/cwlee00/SOL.