Reading Between the Citations: A Typed Claim Network for Scientific Literature

Retrieval-Augmented Generation can improve factuality by grounding answers in external evidence, but Agentic GraphRAG complicates what it means for citations to be faithful. In these systems, an agent explores a knowledge graph before producing an answer and a small set of citations. We frame citation faithfulness as a trajectory-level problem: final citations should not only support the answer, but also account for the graph traversal, structure, and visited-but-uncited entities that may influence it. Through controlled ablation experiments, we compare the effects of isolating, removing, and masking cited and uncited graph entities. Our results show that cited evidence is often necessary, as removing it substantially changes answers and reduces accuracy. However, citations are not sufficient, because accurate answers can also depend on uncited traversal context and surrounding graph structure. These findings suggest that citation evaluation in Agentic GraphRAG should move beyond source support toward provenance over the broader retrieval trajectory.

How does research evolve, and what substrate would let us forecast where it goes next? Scientific progress is not simply a uniform accumulation of facts: ideas extend prior methods, address known limitations, realize proposed future directions, and sometimes dispute earlier claims. Existing citation graphs usually collapse these roles into a single homogeneous edge type, limiting how we can analyze scientific progress. We address this gap by proposing the SciTraj corpus, the first claim-grounded typed citation graph in which each edge is linked to the specific claim sentence that motivates it. Claim-bearing sentences are extracted from paper sections; four claim-driven relations are verified by NLI entailment against in-paper context, while two similarity-only relations are gated by abstract cosine and year-gap rules. SciTraj contains 32,559 papers from NLP, ML, and Vision (2015--2024), connected by 573,126 directed edges across six relation types, with NLI-verified claim seeds. Using SciTraj, we identify disciplinary siloing in typed citation flow and topic emergence concentrated in Vision and LLM-related work. The corpus also contains 287M typed trajectories of length $\geq 3$, covering 72.8% of papers, and supports a temporally split typed link-prediction benchmark. A year-shuffle falsifiability test separates temporal structure from year-correlated content, and a 3-annotator pilot reports $κ= 0.74$ with 79.9% precision.

Large language models are increasingly used to assist scientific reading, but existing evaluation methods often fail to detect whether answers are supported by verifiable citations. We introduce ResearchQA, a benchmark of 6,211 single-paper question-answer pairs from 494 open-access papers spanning eight domains and four question types: lookup, comprehension, multi-hop, and adversarial. ResearchQA is designed for citation-grounded evaluation: it permits multiple valid supporting passages for a claim and rewards grounded refusal when the source paper does not support an answer. We evaluate eight leading closed- and open-weight models in a citation-grounded chat-with-paper setting using a deterministic citation matcher and an LLM-based rubric evaluator. Citation-based metrics separate systems more clearly than LLM-evaluator scores: section coverage and citation accuracy vary substantially across models, while evaluator scores remain tightly compressed. We further find that open-weight models approach the best closed-model citation accuracy while achieving 3 to 6 times lower per-example latency. We release the benchmark, evaluation harness, and evaluator prompt.