Unlocking the Black Box of Latent Reasoning: An Interpretability-Guided Approach to Intervention

Chain-of-Thought (CoT) prompting often improves the reasoning performance of large language models (LLMs), but the internal signal that triggers this behavior remains poorly understood. Leveraging the sparse features captured by Sparse Autoencoders (SAEs), we propose a systematic framework to analyze and intervene on the internal representations of LLMs, identifying a small set of latent features that are linked to reasoning behavior and can be causally tested through targeted intervention. Across multiple model families and reasoning benchmarks, we show that steering one or a small number of reasoning-related latent features can substantially induce reasoning behavior without explicit CoT prompting, achieving accuracy comparable to CoT. We further show that the identified features are not tied to particular wording patterns or verbosity, and confirm their causal role in reasoning through suppression experiments that impair performance even under CoT prompting. These results suggest that CoT prompting activates specific latent features to trigger reasoning, and that targeted intervention on these features offers an alternative pathway to elicit efficient reasoning behavior without explicit CoT prompting. Code is available at https://github.com/Zhenghao-He/LatentCoT.

Large language models achieve high reasoning performance via explicit chain-of-thought and reinforcement learning, but require long output sequences and extended inference time. Latent reasoning reduces this cost by shifting computation into a latent space; however, continuous latent methods are hard to train, suffering from unstable and uninterpretable reasoning trajectories. We argue these issues stem from a misalignment between continuous-space reasoning and discrete symbolic supervision, as continuous states lack explicit anchors for step-by-step alignment. To resolve this, we propose \textbf{Discrete Latent Reasoning~(DLR)}, the first method that converts continuous latent states into explicit discrete tokens. Inspired by render-based compression, we render textual chains of thought into images, extract visual features, and construct a discrete latent vocabulary via clustering-based fine-tuning. Expanding the vocabulary and output head enables standard autoregressive modeling over both natural language and latent tokens, supporting pretraining alignment, SFT, and RL. Experiments on five reasoning benchmarks and two model series~(Qwen3-VL and LLaMA-3) confirm that \textbf{DLR} outperforms prior latent reasoning baselines with up to \textbf{20$\times$ compression}. Furthermore, the learned latent trajectories retain an interpretable semantic structure. Overall, discrete latent tokens provide a controllable and interpretable basis for efficient latent reasoning.

Large Language Models (LLMs) increasingly rely on intermediate reasoning, yet explicit Chain-of-Thought (CoT) suffers from a linguistic space bottleneck: each thought must be decoded into tokens, causing high inference overhead. Latent reasoning moves deliberation into continuous space, but existing methods mostly learn deterministic or reward-maximizing paths, lacking a principled way to allocate probability across trajectories with different correctness and costs. We propose Latent Thought Flow (LTF), which models reasoning as variable-length continuous trajectories and trains a sampler to match a reward-induced posterior over answer quality and computation cost. We instantiate this with a continuous GFlowNet using stochastic latent transitions. To handle sparse answer supervision, we introduce an Entropy-Weighted Subtrajectory Balance objective for intermediate rewards and a reference-prior regularizer to anchor exploration. Experiments under finetuning and transfer learning settings show that LTF outperforms explicit CoT and latent reasoning baselines, improving accuracy by 9.5% while reducing reasoning length by 27.2% on average compared with strong latent reasoning baselines.