Segment-driven Structural Induction and Semantic Alignment for Heterogeneous Tabular Representation

Table annotation is crucial for making web and enterprise tables usable in downstream NLP applications. Unlike textual data where learning semantically rich token or sentence embeddings often suffice, tables are structured combinations of columns wherein useful representations must jointly capture column's semantics and the inter-column relationships. Existing models learn by linearizing the 2D table into a 1D token sequence and encoding it with pretrained language models (PLMs) such as BERT. However, this leads to limited semantic quality and weaker generalization to unseen or rare values compared to modern LLMs, and degraded structural modeling due to 2D-to-1D flattening and context-length constraints. We propose TabEmb, which directly targets these limitations by decoupling semantic encoding from structural modeling. An LLM first produces semantically rich embeddings for each column, and a graph-based module over columns then injects relationships into the embeddings, yielding joint semantic-tructural representations for table annotation. Experiments show that TabEmb consistently outperforms strong baselines on different table annotation tasks. Source code and datasets are available at https://github.com/hoseinzadeehsan/TabEmb

Schema matching is a fundamental step in integrating heterogeneous data sources. While Pre-trained Language Models (PLMs) have revolutionized this task by capturing linguistic semantics, they typically process tabular data as serialized text sequences of standalone column descriptions. This serialization discards critical structural information -- specifically, the row-level co-occurrences, i.e. the relational context -- forcing models to rely solely on column header semantics or standalone distributions. To bridge this gap, we propose SemStruct, a framework that joins the semantic power of frozen PLMs with the structural inductive bias of Graph Neural Networks (GNNs). We model the table as a heterogeneous graph where columns and values are nodes connected by rows, allowing the GNN to propagate disambiguating context across the structure. Unlike other state-of-the-art methods that require proprietary LLM access and fine-tuning of language models, SemStruct keeps the language model frozen and trains only a lightweight structural encoder. Extensive experiments on the Valentine and SOTAB-SM benchmarks demonstrate that SemStruct achieves state-of-the-art performance, outperforming fully fine-tuned baselines on complex, semantically joinable datasets. Furthermore, our ablation studies reveal that row representations serve primarily as topological conduits rather than semantic entities, validating the necessity of explicit structural modeling in schema matching.

Transformer-based table retrieval systems flatten structured tables into token sequences, making retrieval sensitive to the choice of serialization even when table semantics remain unchanged. We show that semantically equivalent serializations, such as $\texttt{csv}$, $\texttt{tsv}$, $\texttt{html}$, $\texttt{markdown}$, and $\texttt{ddl}$, can produce substantially different embeddings and retrieval results across multiple benchmarks and retriever families. To address this instability, we treat serialization embedding as noisy views of a shared semantic signal and use its centroid as a canonical target representation. We show that centroid averaging suppresses format-specific variation and can recover the semantic content common to different serializations when format-induced shifts differ across tables. Empirically, centroid representations outrank individual formats in aggregate pairwise comparisons across $\texttt{MPNet}$, $\texttt{BGE-M3}$, $\texttt{ReasonIR}$, and $\texttt{SPLADE}$. We further introduce a lightweight residual bottleneck adapter on top of a frozen encoder that maps single-serialization embeddings towards centroid targets while preserving variance and enforcing covariance regularization. The adapter improves robustness for several dense retrievers, though gains are model-dependent and weaker for sparse lexical retrieval. These results identify serialization sensitivity as a major source of retrieval variance and show the promise of post hoc geometric correction for serialization-invariant table retrieval.