Beyond Homophily: Towards Generalized Graph Reconstruction Attack and Defense

The application of graph data in numerous disciplines raises the need for gathering and analyzing huge volumes of data, some of which is private and sensitive. The non-Euclidean nature of the graph data makes the analysis computationally challenging, leading to the use of Graph Neural Networks (GNNs) in the age of AI. GNNs may inadvertently leak sensitive data they are trained on, which raises serious data security issues, including the model inversion attack. In this study, we analyze GNNs' vulnerabilities by introducing two novel graph inversion (i.e., reconstruction) attacks: graph-label conditioned (GLC) attack and embedding-label conditioned (ELC) attack, utilizing targetmodel predictions and their intermediate representations, respectively. We perform a comprehensive analysis of our introduced privacy attacks and compare them with existing baselines across three benchmark graph datasets (i.e., NCI1, PROTEINS, and AIDS) and four graph distributional/structural metrics (i.e., FGD, EGD, MMD, and GKS). Our work demonstrates that an adversary can use the generator-discriminator technique to reconstruct high-quality graphs in real-world black-box attack scenarios against GNNs. Additionally, we present a variant of our attacks (Ours--) with 50% reduced queries, achieving good or comparable reconstruction attack performance. In addition, we show that GNNs are highly vulnerable to privacy attacks, varying Laplacian noise-scales.

Regulatory frameworks such as GDPR increasingly require that ML predictions be accompanied by post-hoc explanations, even when raw data and trained models cannot be released. Differential privacy (DP) is the standard mitigation for the residual privacy risk of releasing these explanations. We show that DP is not sufficient: an adversary observing only DP-perturbed GNN explanations can reconstruct hidden graph structure with high accuracy. Our attack, PRIVX, exploits the fact that the Gaussian DP mechanism is a single DDPM forward step at known noise level σ(ε), recasting reconstruction as reverse diffusion conditioned on the corrupted signal, a principled Bayesian denoiser under known DP corruption. We formalise a stratified adversary model parameterised by (M, \hatε, \hatδ, S, ρ) that interpolates between oblivious and oracle attackers, and derive endpoint-matched two-sided bounds on reconstruction AUC. For practitioners, we provide regime-stratified guidance on explainer choice: on homophilic graphs, neighbourhood-aggregating explainers (GraphLIME, GNNExplainer) leak more structure than per-node gradient explainers under the same DP budget; on strongly heterophilic graphs the ordering reverses. We introduce PRIVF as an auxiliary diagnostic sharing the same diffusion backbone to decompose leakage into explainer-induced and intrinsic graph-distribution components. Experiments across seven benchmarks, three DP mechanisms, and three GNN backbones show PRIVX achieves AUC above 0.7 at ε = 5 on five of seven datasets, with the attack succeeding well within typically deployed privacy budgets.

Graph neural networks (GNNs) deployed as cloud services can be stolen through model-extraction attacks, which train a surrogate from query responses to reproduce the target's behavior, and a growing line of ownership defenses tries to prevent or trace such theft. This paper asks two questions: how hard is it to steal a GNN, and can we stop it? Prior work cannot answer either, because experiments use inconsistent datasets, threat models, and metrics. We introduce GraphIP-Bench, a unified benchmark that evaluates both sides under a single black-box protocol. GraphIP-Bench integrates twelve extraction attacks, twelve defenses spanning watermarking, output perturbation, and query-pattern detection, ten public graphs covering homophilic, heterophilic, and large-scale regimes, three GNN backbones, and three graph-learning tasks. It reports fidelity, task utility, ownership verification, and computational cost on shared splits, queries, and budgets. We further add a joint attack-and-defense track that runs every attack on every defended target and measures watermark verification on the resulting surrogate, exposing how much protection a defense retains after extraction. The empirical picture is clear: stealing a GNN is easy at medium query budgets and most defenses do not change this; several watermarks verify reliably on the protected model but lose most of their verification signal on the extracted surrogate, exposing a gap that single-model evaluations miss; and heterophilic graphs are systematically harder to steal, while a cross-architecture mismatch between target and surrogate reduces but does not prevent extraction. We release GraphIP-Bench with reproducible scripts and configurations, and integrate the attacks and defenses into the PyGIP library. Code: https://github.com/LabRAI/GraphIP-Bench. Library: https://labrai.github.io/PyGIP/index.html.