When Poison Fails After Retrieval: Revisiting Corpus Poisoning under Chunking and Reranking Pipelines
Authors: Xi Nie, Hongwei Li, Shenghao Wu, Mingxuan Li, Jiachen Li, Wenbo Jiang
Organizations: School of Computer Science and Engineering, University of Electronic Science and Technology of China, China · School of Criminal Investigation, People’s Public Security University of China, China · School of Computer Science and Artificial Intelligence, Wuhan University of Technology, China
Retrieval-Augmented Generation (RAG) systems are vulnerable to corpus poisoning attacks that manipulate downstream model outputs through malicious knowledge injection. Existing studies mainly evaluate poisoning under simplified retrieval settings, overlooking practical RAG pipelines involving document chunking, dense retrieval, reranking, and grounded generation. In this paper, we revisit corpus poisoning under realistic multi-stage retrieval pipelines and show that many existing attacks substantially degrade after reranking despite achieving high retrieval-stage relevance. We identify retrieval granularity mismatch as a key reason for this failure: document-level adversarial signals are often fragmented during chunking, while rerankers favor locally coherent and answer-bearing passages rather than globally optimized semantic similarity. Based on this observation, we propose Chunk-aware and Rerank-Consistent Poisoning (CRCP), a poisoning framework that jointly optimizes retrieval relevance, reranker consistency, and chunk-boundary robustness. CRCP explicitly models chunking transformations during optimization to generate locally self-contained adversarial passages that remain effective under varying chunking configurations. Experiments on standard RAG benchmarks with multiple retrievers and rerankers show that existing poisoning methods are highly sensitive to chunk size and reranking strategies, whereas CRCP achieves substantially higher attack success rates and stronger robustness across realistic retrieval pipelines. Our findings highlight an important realism gap in current RAG security evaluation and suggest that poisoning in modern RAG systems should be studied as a multi-stage retrieval consistency problem rather than a retrieval-only problem.
Retrieval-Augmented Generation (RAG) systems ground large language models (LLMs) in external corpora, but this reliance exposes them to corpus poisoning: maliciously injected passages that manipulate retrieved evidence. We introduce RAGuard, a layered defense against \emph{factual} corpus-poisoning attacks on RAG pipelines. The first layer adversarially fine-tunes a dense retriever on synthetic poisoned documents (fabricated facts, contradictions, and reasoning traps), teaching it to downrank malicious passages before generation. The second layer, the Zero-Knowledge Inference Patch ZKIP, is a label-free, black-box filter: for each retrieved document, it performs a leave-one-out decode and scores the document by the semantic shift and output-entropy change that its removal induces. ZKIP requires no poison labels, no ground-truth answers, and no access to model internals; it compares the model's own answers under counterfactual contexts. On poisoned Natural Questions at 5--30% poison ratios, adversarial retriever training alone reduces but does not eliminate attack success, while ZKIP drives the measured attack success rate to 0.000 in every defended configuration, keeping Recall@5 within 0.03 of the clean-corpus baseline. Supervised analyses on both Natural Questions and BEIR (NFCorpus) confirm that the counterfactual signals ZKIP relies on carry learnable poison structure. The defense costs k+1 generator passes per query (6× for k=5); we analyze batching and early-stopping approximations that reduce this overhead. We also show that keyword-preserving poisons leave lexical retrievers such as BM25 essentially unaffected, an observation that delineates the boundary of the threat model. Code, datasets, and evaluation harnesses are released for reproducibility.
Retrieval-Augmented Generation (RAG) systems are vulnerable to knowledge base poisoning, yet existing attacks have been evaluated almost exclusively against vanilla retrieve-then-generate pipelines. Architectures designed to handle conflicting retrieved information - multi-agent debate, agentic retrieval, recursive language models - remain untested against adversarially optimized contradictions. We evaluate four RAG architectures (vanilla RAG, agentic RAG, MADAM-RAG, and Recursive Language Models) under controlled single-document (N=1) poisoning on 921 Natural Questions QA pairs, comparing a clean baseline, naive injection, and CorruptRAG-AK - an adversarial attack whose meta-epistemic framing targets credibility assessment. Architecture is a high-impact variable in adversarial robustness: under CorruptRAG-AK, attack success rates range from 81.9% (vanilla) to 24.4% (RLM) - a spread of nearly 58 percentage points across architectures with comparable clean accuracy (~92%). Decomposing this gap, once the poisoned document is retrieved, adversarial framing - not retrieval optimization - drives the majority of CorruptRAG-AK's advantage for three of four architectures, localizing the cross-architecture vulnerability at the content-reasoning stage. Our MADAM-RAG reimplementation shows the highest apparent contradiction detection rate, though our LLM judge over-identifies this behavior (~48.5% precision), so reported rates are upper bounds. Regardless of detection, MADAM-RAG cannot resolve contradictions reliably, producing a 41.4% non-answer rate even on clean inputs - though implementation divergences from the original may contribute. We introduce a seven-category behavioral taxonomy capturing contradiction detection, hedging, and failure modes beyond binary accuracy. Code, data, and analysis notebooks are publicly available.
Retrieval-Augmented Generation (RAG) systems are vulnerable to corpus poisoning attacks that manipulate model outputs through malicious retrieved documents. Existing detection methods typically rely on auxiliary classifiers or additional LLM-based verification, introducing substantial computational overhead. We present TRACE, a lightweight detection framework that identifies poisoning attacks by tracing answer-related tokens through token influence attribution. TRACE first discovers recurrent high-influence keywords across retrieved documents and then performs a secondary verification to confirm their influence on model predictions. Experiments on three QA benchmarks and six LLMs demonstrate strong detection performance while simultaneously uncovering attacker-specified target answers.