The Data Manifold under the Microscope

We study latent geometry as an explicit component of representation quality in data-scarce learning. For an encoder (φ), we define (Q_{β,γ}(φ)=I(φ(X);Y)-β\mathcal C(φ)-γd_{\mathrm{int}}(φ)), combining task-relevant information with penalties for curvature and intrinsic latent dimension. Thus geometry becomes part of the bottleneck criterion, not only a post hoc diagnostic. Under smooth-manifold, loss-transfer, and estimator-concentration assumptions, we derive non-asymptotic low-label generalization bounds where intrinsic dimension and covering complexity enter explicitly. We characterize the information--geometry frontier and prove empirical-surrogate consistency. The analysis links encoder geometry to learning through latent covering numbers, loss-class entropy, and uniform deviation. We instantiate the theory as \texttt{V-GIB}, adding curvature and dimension penalties to variational bottleneck training. Real low-label benchmarks compare \texttt{V-GIB} with ERM, VIB, and ablations across (1%)--(20%) label fractions. Results show improved performance and reduced geometric complexity in several regimes, especially FashionMNIST and CIFAR-10, while confirming that no fixed regularizer is universally dominant.

Deep neural networks on manifold-valued representations have attracted growing interest, but many basic components remain tied to specific manifolds, rely on Euclidean approximations, or require costly and numerically fragile geometric operations. This thesis develops a unified framework for Riemannian deep learning from three complementary perspectives: reusable neural modules, manifold-specific network architectures, and the design of underlying geometries. It generalizes batch normalization from Euclidean spaces and individual manifolds to broad classes of Lie groups and gyrogroups, and extends multinomial logistic regression from Euclidean space to SPD manifolds and then to general Riemannian manifolds. It further develops neural networks for several important geometric representations, including an unconstrained model of hyperbolic space, Busemann-based hyperbolic learning, and full-rank correlation matrices. Finally, it introduces adaptive and computationally efficient Riemannian metrics on SPD manifolds, including learnable Log-Euclidean geometries and fast, stable Cholesky-based geometries. The proposed methods are supported by theoretical analysis and validated through numerical experiments and applications in vision, signal processing, graph learning, and genomics.

A central objective of machine learning is to identify structure and patterns in data. Advances in data acquisition have increasingly produced datasets whose observations possess rich geometric form, giving rise to shape spaces that encode variability in object geometry. Such datasets arise across a wide range of disciplines, including biology, medicine, anthropology, and computer vision, where subtle geometric differences often carry important scientific information. Traditional machine learning methods, however, are frequently ill-equipped to account for the nonlinear geometric structure underlying these data. This survey synthesizes a rapidly growing body of work on shape space analysis, which provides a mathematical and computational framework for the study of geometric data. Drawing on ideas from differential geometry, statistics, and machine learning, we organize the literature around a common analytical pipeline: shape representation and parameterization, the rigorous construction of robust geodesic metrics, statistical analysis on shape spaces, and geometry-aware learning methods. We discuss how these tools enable the characterization of shape variability, the comparison of geometric objects, and the analysis of structural trajectories across populations and time. To illustrate the breadth of the field, we highlight applications spanning multiple scales of biological organization, including studies of subcellular morphology and primate tooth evolution. Across these and many other domains, researchers face common challenges arising from complex, nonlinear, and often unaligned geometric variation. The review concludes by identifying key theoretical and computational challenges, as well as emerging opportunities driven by increasingly large and diverse geometric datasets.