Mitigating Position Bias in Transformers via Layer-Specific Positional Embedding Scaling

Self-attention models content-dependent interactions between tokens but does not by itself encode token order. Position encoding addresses this limitation by introducing absolute coordinates, relative distances, or position-dependent rotations into Transformer representations and attention scores. This technical survey develops a unified account of sinusoidal and learned absolute position embeddings, Shaw-style relative position representations, Transformer-XL, T5 relative position bias, ALiBi, and Rotary Position Embeddings (RoPE). We derive how RoPE converts absolute position indices into relative phase differences in Query-Key inner products and compare these methods in terms of where position is injected, computational cost, compatibility with KV caching, and length extrapolation. We then examine long-context extensions, including Position Interpolation, RoPE scaling laws, NTK-aware scaling, Dynamic NTK, NTK-by-parts, YaRN, LongRoPE, and LongRoPE2, with emphasis on frequency allocation, attention rescaling, training length, and target context length. We also summarize implementation considerations, evaluation protocols, and position-encoding choices in representative large language models. A central conclusion is that the ability to compute positional features beyond the training length does not imply reliable long-context generalization; context extension must be evaluated through short-context retention, position-wise perplexity, retrieval, reasoning, and long-context code tasks.

Positional encoding in transformers is commonly implemented through positional embeddings, attention masks, or bias terms, but formal connections between these mechanisms remain limited. We study attention with positional bias through the lens of locality-sensitive hashing (LSH), focusing on Attention with Linear Biases (ALiBi). We show that the ALiBi bias matrix is the expectation of contiguous block-diagonal binary masks induced by a ``positional LSH'' scheme. The empirical mean of masks sampled from this scheme yields spectral norm and max-norm approximation guarantees with bounded block sizes with high probability. This structural theorem implies a uniform approximation theorem for ALiBi-biased attention: with high probability over the sampled masks, the approximate attention output is accurate simultaneously for all query-key-value inputs and can be computed in near-linear time in the context length, reducing long-context ALiBi to a collection of randomized short-context regular (positionally unbiased) attention operations. Conceptually, this connects positional bias, masks, and positional embeddings in a single formal framework and suggests an approach to efficient ALiBi-biased attention. Experiments on large language models validate our theoretical findings.

Rotary Position Embedding (RoPE) is widely adopted in Transformers to encode positional information, yet standard implementations enforce a uniform frequency schedule and scaling across all attention heads. Using simplified retrieval tasks and length generalization scenarios, we show -- both empirically and theoretically -- that heads with different functional roles require distinct frequency ranges and attention scaling factors to operate effectively. Ignoring this structure leads to suboptimal utilization of embedding dimensions and degraded performance, particularly under long-context settings. To address these limitations, we propose AdaRoPE, which equips each attention head with learnable rotation frequencies and attention scaling factors. Pretrained LLMs with AdaRoPE consistently outperform existing RoPE variants, including partial RoPE and NoPE baselines. For context extension, we further show that uniform frequency and attention scaling, used in methods such as YaRN, are suboptimal. By applying head-specific scaling, AdaRoPE enables better context extension while better preserving short-context performance in both the extrapolation setting and the long-context continued pretraining setting. These results highlight the importance of optimizing rotary position embedding at the level of individual attention heads.