A Multi-Attribute Latent Space for Visual Analysis of Watches

Earth system science is producing increasingly large, high-dimensional datasets from both physics-based and AI-driven models. While embedding-based representations make these data searchable and serve as foundational building blocks for AI-driven discovery engines, nearest neighbors in latent spaces are not automatically scientifically meaningful. They may reflect real meteorological structures, or simply artifacts of preprocessing, geography, or model bias. Researchers therefore need visual tools to inspect latent space organization, trace search results back to physical evidence, and evaluate candidate representations against one another. We present an open source visual analytics workbench designed to support this provenance-aware scientific retrieval workflow. The system links distinct embedding experiments to shared source data, metadata, spatial contexts, and model configurations. It enables interactive retrieval strategy design by allowing users to issue image-level and localized patch-level queries, apply multi-constraint filters, and inspect analogs through familiar meteorological views. This facilitates a discovery loop where scientists characterize a phenomenon in a well-understood dataset and use its latent signature to probe larger archives. While we demonstrate the workbench through a tropical cyclone retrieval scenario using a vision foundation model (DINOv3) on ERA5 data, the framework is model-agnostic and designed to integrate with other embedding architectures in the future. Finally, we evaluate its out-of-core retrieval backend, demonstrating that interactive visual search over tens of millions of embeddings is highly scalable on commodity hardware.

Unsupervised learning methods -- topic modeling, partition-based and density-based clustering -- produce data groupings without human guidance, yet choosing and evaluating those groupings should not itself be unsupervised. We present \emph{SmartIterator}(SI), a visual analytics approach that treats the full sequence of grouping results across a parameter sweep as a first-class analytical object. For each method family, SI provides a structured six-phase workflow that guides the analyst through systematic exploration of grouping results -- from quality-metric overview through transition-stability assessment, membership-confidence evaluation, content and context inspection, and recurrent-archetype verification to an informed decision -- building cumulative understanding of data structure along the way. The workflows are operationalized through \emph{IteraScope}(IS), a coordinated visual display combining quality-metric charts with semantic color encoding, a 1D group embedding with Sankey-style transition flows and violin plots of membership confidence, a 2D group embedding with HDBSCAN-detected recurrent archetypes that highlights iterations capturing all persistent patterns, and domain-specific linked views for contextualized interpretation. We demonstrate the three workflows on: (1)~simulated social-media messages from the VAST Challenge 2011 (density-based clustering, validated against ground truth), (2)~EU population statistics across ${\sim}1\,500$ NUTS-3 regions (partition-based clustering), and (3)~30 years of IEEE VIS papers (NMF topic modeling). The workflows constitute the main contribution: they provide actionable, method-specific guidance for navigating parameter spaces, studying how data structure evolves across configurations, and grounding analytical understanding in domain context -- yielding knowledge about the data that no single ``best'' result can provide.

Latent embeddings have become a central data abstraction in modern machine learning, especially in biomedicine, where foundation models are increasingly used to encode multimodal data like clinical text, medical images, omics, and physiological signals. However, the utility and value of these representations depends on understanding their quality, structure, and the information they encode. Existing analysis workflows for evaluating representations remain fragmented across custom scripts, isolated metrics, and most importantly lack multimodal analysis, limiting accessibility and reproducibility. We present LatentVerse, a representation analysis resource that combines a web-based visual analytics platform for accessible, report-driven exploration with a command-line interface for scalable technical workflows. LatentVerse unifies diagnostics for various representation quality metrics and extends to multimodal settings by decomposing embeddings into shared and modality-specific components. We evaluate LatentVerse through controlled unimodal and multimodal simulations, discovery-oriented analyses on real biomedical embeddings, and a user study across diverse use cases. By supporting thorough and interpretable evaluation of latent spaces, LatentVerse makes foundation model representations more understandable in biomedical and data science applications.