Same Concept, Different Directions: Cross-Modal Feature Heterogeneity in Sparse Autoencoders
Authors: Chungpa Lee, Jihoon Kwon, Kyle Min, Jy-yong Sohn
Organizations: Yonsei University, Korea · Seoul National University, Korea · Oracle, USA
Abstract
Vision-language models map images and text into a joint embedding space. However, these embeddings often entangle multiple semantic features, which limits their interpretability and controllability. While sparse autoencoders have emerged as a useful tool for decomposing these embeddings into monosemantic features, their application to joint embedding spaces has largely relied on an implicit, untested assumption that semantically corresponding features share the same directions across modalities. In this paper, we challenge this assumption by identifying discrepancies in feature directions for the same concept across image and text modalities, a phenomenon we term cross-modal feature heterogeneity. We demonstrate that this heterogeneity is a key driver of the modality split, where a shared concept activates different latents depending on the modality. This finding further reveals why aligning latent activations alone is insufficient to resolve the underlying feature mismatch. Motivated by this observation, we propose an approach that trains modality-specific sparse autoencoders to preserve each modality's feature geometry, and then aligns corresponding features post hoc. Our method improves reconstruction fidelity and enhances performance in cross-modal retrieval and concept steering.
Sparse autoencoders (SAEs) have emerged as a promising technique for mechanistic interpretability by learning a set of sparse latent features in large models, each of which encodes a distinct concept. However, in vision-language models (VLMs), vanilla SAEs struggle to learn modality-consistent concepts, with concepts often exhibiting fragmented coverage (i.e., disjoint regions) in the visual modality. To address this challenge, we propose a Structured Sparse AutoEncoder (S2AE) that enforces concept consistency from both semantic and spatial perspectives in the visual modality. Specifically, we group image patches based on Transformer attention similarity and spatial proximity, and introduce a structured sparsity regularization when training the vanilla SAE. The regularization consists of exclusive sparsity for inter-group concept disentanglement and group sparsity for intra-group concept consistency, which drives the latent neurons by SAEs to specialize in distinct, semantically grounded concepts. Evaluated on the \texttt{Qwen2.5-VL-7B-Instruct} model, the method achieves 6.06% average improvement in semantic alignment (mIoU) and 60.81 in representational efficiency (lower l0 norm) while maintaining near-perfect reconstruction fidelity with an Explained Variance above 99%. Cross-modal analysis further demonstrates that S2AE enhances neuronal monosemanticity by this visual structural prior, achieving a 3.08% average gain in semantic consistency and a 2.37% average gain in monosemanticity scores for both modalities of multimodal features, thereby fostering more coherent and disentangled representations.
Sparse Autoencoders (SAEs) have shown promise for analyzing language models, but applying them to vision-language models (VLMs) often yields representations that are difficult to use as controllable cross-modal steering directions. We introduce the Joint Sparse Autoencoder (JSAE), which uses an explicit alignment constraint to jointly factorize sequence-pooled vision and language activations into shared, interpretable image/caption-level features. Applied to LLaVA, JSAE recovers cross-modal features for recognizable concepts (e.g., food and animals). Through bidirectional interventions (additive steering and suppression), we observe a layer-dependent asymmetry under our protocol: additive steering peaks at mid-to-late (pre-output) layers and weakens at both ends, whereas suppression scores remain within a comparable range across all probed layers within statistical noise. Experiments on three VLMs, namely LLaVA-v1.6-Mistral-7B, Llama3-LLaVA-8B, and the MoE-based Qwen3-VL-30B, show related layer-localized effects across architectures. Together, these results suggest that explicitly aligned sparse representations support more controllable intervention-based analysis of multimodal features, within an identifiable layer range, than the unconstrained alternatives tested here.
Vision-language models learn powerful multimodal embeddings, yet their internal semantics remain opaque. While sparse autoencoders (SAEs) can extract interpretable features, they rely on expanding the representation dimension, which compromises the original geometry and introduces redundancy. We introduce CEDAR (Conceptual Embedding Disentanglement via Adaptive Rotation), a post-hoc method that reveals the compositional structure of pretrained embeddings without increasing dimensionality. By learning an invertible transformation with a top-k sparsity bottleneck, CEDAR concentrates semantic information into axis-aligned disentangled coordinates. In CLIP-like architecture, individual coordinates can be interpreted with textual concepts, while for generative models such as BLIP, they can be decoded into natural language descriptions. Experiments demonstrate that CEDAR achieves a competitive reconstruction-sparsity trade-off while producing explanations that are more interpretable and better aligned with human perception. Our results suggest that the apparent entanglement in vision-language representations can be resolved through a suitable change of basis, eliminating the need for overcomplete expansions.