High-Resolution Flood Mapping With Sentinel-1 and Sentinel-2 via Misalignment-Robust Cross-Sensor Learning and Generative Despeckling
Authors: David Ma, Jeremy Feinstein, Shreya Pandit, Arkaprabha Ganguli, Eugene Yan
Organizations: Argonne National Laboratory, Lemont, IL 60439 USA · Ohlone College, Fremont, CA 94539 USA
Abstract
Reliable high-resolution flood extent mapping from satellite imagery remains constrained by limited data fidelity and sensor-specific artifacts. Multispectral optical imagery is degraded by clouds, shadows, and urban confounders, while synthetic aperture radar (SAR) imagery is affected by speckle noise and sensor co-registration uncertainty. This work presents an integrated flood mapping framework that jointly addresses these limitations through curated datasets and novel learning strategies. We introduce a new Sentinel-2 (S2) and Sentinel-1 (S1) dataset covering the contiguous United States, featuring pixel-accurate 10 m water masks with emphasis on challenging weather conditions and urban environments that are underrepresented in existing benchmarks. High-quality S2 annotations are manually produced using rigorous geospatial labeling protocols and transferred to SAR imagery through weakly labeled temporally coincident acquisitions. To address SAR-specific artifacts, a shift-invariant loss function is employed to tolerate residual geolocation uncertainty between SAR imagery and optical-derived labels, and a Conditional Variational Autoencoder (CVAE) is trained on multitemporal SAR composites to suppress speckle while preserving flood-relevant spatial structure. Experiments using UNet and UNet++ architectures demonstrate strong multispectral performance (AUPRC up to 0.956) and statistically significant improvements in SAR flood mapping when using shift-invariant loss and CVAE-based despeckling compared to classical filters. These results underscore the importance of dataset fidelity, misalignment-robust training, and demonstrate the viability of generative despeckling for operational flood mapping.
Accurate flood water mapping is critical for disaster management, yet current methods struggle to fully exploit the potential of spaceborne imagery. Optical data offers high interpretability but is limited by environmental conditions, whereas SAR provides reliable all-weather coverage with reduced visual interpretability. FLoRA (Fusion Latent for Optical Reconstruction and Area Segmentation) is a cross-modal multi-task framework that jointly reconstructs high-fidelity optical imagery and segments flood water regions from Sentinel 1 SAR by fusing the complementary strengths of optical and SAR data. During training, a lightweight optical teacher (driven by RGB and NDVI priors) provides pyramidal features that guide SAR representations into a fusion latent space via multiscale windowed cross attention and FiLM conditioning, with gated residuals preventing overcorrection. This design enables multi-task learning across two complementary objectives: (a) SAR-to-optical translation for fine-grained RGB reconstruction and (b) flood water region segmentation for hydrologic interpretation. The dual decoders are optimized using Charbonnier SSIM for structural fidelity, edge FFT magnitude losses for spectral realism, and Dice BCE hydrology-aware edge alignment for precise flood water delineation. A feature distillation constraint further aligns fused SAR features with the optical teacher's manifold. Evaluations on SEN1FLOODS11, DEEPFLOOD, and SEN12MS demonstrate that FLoRA surpasses fusion baselines in PSNR, SSIM, and LPIPS, demonstrating that multi-modal fusion within a teacher-guided latent space yields semantically faithful and physically consistent flood-water intelligence from spaceborne observations.
Rapid and accurate flood prediction is essential for disaster response and mitigation planning. Synthetic Aperture Radar (SAR) sensors in satellites are well-suited for this purpose because they operate independently of weather and daylight conditions. Although SAR-based data enable all-weather flood monitoring, distinguishing flooded land from permanent water remains a significant challenge, particularly when flooding is defined strictly as inundated land. This study provides a comprehensive comparison of convolutional neural network (CNN) and vision transformer architectures for multi-class flood segmentation using Sentinel-1 SAR imagery, specifically trained to separate flooded land from permanent water bodies and land. Three state-of-the-art (SOTA)CNN-based models, U-Net, U-Net++, and DeepLabV3 with ResNet-34 backbone, and three SegFormer variants (b0,b1,b2) were evaluated in two benchmark datasets, the ETCI NASA dataset and SenFloods11, using scene-based data splits to ensure a realistic assessment of spatial generalization. The results demonstrate that SegFormer-b2 significantly outperforms the U-Net baseline on the ETCI dataset (higher flood IoU across all 7 test scenes in the Wilcoxon signed-rank test), while after fine-tuning on Sen1Floods11, the advantage narrows to within the range of scene variability and is concentrated in spatially fragmented flood events. The study includes both qualitative and quantitative explainability techniques to visually comprehend model decisions and systematically assess prediction reliability. Qualitative analysis reveals that SegFormer-b2 produces more spatially coherent Grad-CAM activations focused on flood-relevant features, while U-Net generates more informative uncertainty estimates along flood boundaries.
Geospatial foundation models aim to learn representations that transfer across regions and sensors, yet evaluating them on specific tasks requires large, high-quality, multi-modal benchmarks that measure how well such models extract value from data. Concerning flood mapping, existing datasets rarely combine bi-temporal SAR and co-registered optical imagery at scale, leaving the value of foundation models for this downstream task largely untested. We introduce GEOID-Flood, a large-scale multi-modal flood segmentation benchmark, derived from Copernicus Emergency Management Service activations, spanning 219 events across 65 countries over ten years. The dataset provides more than 14,000 tiles with co-registered pre- and post-event Sentinel-1, in GRD and RTC format, pre-event Sentinel-2 composite, and DEM, including manually validated labels that separate background from permanent water and flooded water. Using this benchmark, we evaluate foundation models against conventional encoders across single-image, multi-temporal, and multi-modal protocols. We report three main findings: foundation models offer a consistent but modest advantage; optical-SAR fusion with finetuning best resolves transient flooding; and models trained on GEOID-Flood transfer to unseen events better than those trained on existing datasets. Dataset and code available at https://github.com/links-ads/geoid-flood.
Gaetano Chiriaco, Luca Barco, Andrea Bragagnolo +2