cs.CLJul 13, 2026

The Capacity of Thought: Benchmarking Llama 3.2 in Semantic fMRI Neural Language Decoding and Improving the Huth Encoding-Model Baseline

Authors: Milos SuvakovicDom MarhoeferGlenn Grant-RichardsAidan Pinero

Organizations: UC Santa Cruz

Abstract

Decoding continuous language from fMRI signals remains a core challenge in non-invasive brain-computer interface research. We present two complementary investigations. First, we improve the Huth et al. ridge regression encoding pipeline through expanded voxel selection (10K->15K), substitution of GPT-2 medium for GPT-1 as the beam-search proposal model, and GPU-accelerated bootstrap training, achieving mean METEOR = 0.149 and BLEU-1 = 0.200 across three held-out narratives for subject UTS03 -- an 11% relative METEOR gain over our replication baseline. Second, we introduce fMRIFlamingo, which maps BOLD activity to a frozen Llama-3.2-1B with trainable gated cross-attention layers via a learned brain tokenizer and a Perceiver Resampler. Despite achieving 42.86% Top-1 accuracy on a 1-in-100 ranking task, well above chance, a blind control ablation with zeroed fMRI inputs yields near-identical scores, revealing that apparent decoding success is driven primarily by the frozen language prior rather than by neural input. These results demonstrate that high-capacity language models do not inherently improve fMRI decoding and can actively obscure failures without rigorous blind-control evaluation.

Explore similar work

Jun 15, 2026cs.CL

MindAlign: Decoding Inner Speech from fMRI Signals via Multimodal Embedding Alignment under Limited Data

Decoding inner speech from non-invasive brain signals remains a fundamental challenge due to the absence of overt linguistic output, limited training data, and large inter-subject variability. Existing brain-to-text approaches often rely on task-specific decoder fine-tuning, which restricts scalability and complicates adaptation to new participants. We propose MindAlign, a decoupled two-stage brain-to-language framework that enables open-ended text generation from fMRI signals without modifying the underlying language model. The first stage learns a subject-specific neural-semantic alignment that maps fMRI activity into a shared multimodal semantic space, extracting a latent semantic sketch of the internally generated sentence. The second stage integrates this sketch with visual context to prompt a frozen multimodal language model for free-form generation. Experiments on fMRI data collected during silent image description demonstrate that the proposed approach consistently outperforms fMRI-only and random baselines. We further show that the learned semantic-to-language projection can generalize across subjects, enabling effective decoding when paired with subject-specific neural alignment. These results indicate that neural signals modulate semantic content beyond image-driven priors, supporting a scalable and modular direction for brain-to-text decoding.
Muxuan Liu, Ichiro Kobayashi, Satoshi Nishida
Jun 4, 2026cs.AI

Boosting Brain-to-Image Decoding with TRIBE v2 Data Augmentation

Brain decoding is limited by the availability of labeled neural data, and remains challenging in low-data regimes. To address this issue, we investigate whether and when brain decoding can be boosted by augmenting small fMRI datasets with synthetic data generated by a pretrained model of fMRI responses to stimuli. We use TRIBE v2, a large encoding model pretrained on more than 1000 hours of fMRI responses to video, audio and language. For each dataset, we evaluate systematic grids that show how the performance of image decoders varies with the amount of synthetic data used for training. Our results, based on two datasets (the 7T fMRI Natural Scenes Dataset and 3T fMRI BOLD5000), show up to 68% improvement in Top-10 image-retrieval accuracy compared to decoders trained only on real data. Importantly, the proportion of augmented data required to reach a given image decoding performance needs to be adjusted depending on the data source. Surprisingly, image decoders trained exclusively on synthetic fMRI can perform above chance in some settings, suggesting that TRIBE v2 can support zero-shot brain-to-image decoding. Together, these results show how large-scale models of the fMRI responses to sight, sound and language may provide a foundation to improve the data efficiency for image decoding.
Yohann Benchetrit, Marlène Careil, Simon Dahan +3
May 23, 2026cs.LG

What Are We Actually Decoding? Source Attribution for Non-Invasive Brain-to-Language Retrieval

In non-invasive neural language decoding, results can be inflated by sources that are not stimulus-evoked neural evidence: decoder priors, embedding-based metrics, and non-neural structural nuisances such as signal duration. The methodological challenge is therefore attribution: a reported gain is more informative when it can be traced to a specific source. We recast stimulus-locked MEG-to-audio retrieval as an auditing framework that separates apparent performance into three sources - structural shortcuts, window-level stimulus-locked evidence, and cross-window contextual aggregation - and provides a diagnostic for each. Signal-blind Gaussian noise reaches 66.3% Rank@1 (R@1) under variable-length decoding but collapses to near chance once fixed-duration windows and stimulus-identity splits are enforced, isolating structural leakage. Under these controls, fixed-window retrieval recovers measurable MEG-audio discriminability, while an oracle sentence-bucket diagnostic shows that 95.7% of Top-1 errors select the wrong sentence, localising the residual bottleneck to sentence-level competition. We audit this contextual source with Group Context Bias (GCB), an inference-time additive logit bias that pools sentence-consistent evidence across windows while leaving the base retrieval scores and candidate pool fixed. Used as a score-space intervention, GCB makes the contextual source measurable: R@1 shifts from 44% to 52% on Gwilliams and from 22% to 29% on MOUS under the same fixed setting. GCB is auditable under this design: its effect collapses under random-grouping perturbations and vanishes when local evidence is attenuated in MEG or is near chance in EEG, supporting its use as a controlled source-attribution intervention. These results suggest that brain-to-language performance should be source-attributed, not merely reported.
Xinyu Zhang, Sichao Liu, Runhao Lu +2