Coordinated Disentanglement with Iterative Mode Discovery Under Hidden Correlations

To leverage the full potential of multimodal data, we need representations that go beyond the state-of-the-art alignment and fusion approaches and exploit all cross-modal interactions without sacrificing modality-specific information. Learning disentangled representations is a principled way to identify these underlying shared and unique factors that are hidden in observational data. However, while multimodal disentanglement is a compelling paradigm, existing methods are largely confined to the two-modality regime due to its inherent scalability bottleneck. To address this, we propose RePercENT, a self-supervised framework designed to surpass these limitations and unlocks scalable pairwise disentanglement beyond two modalities. Through a multimodal `plug-and-play' architecture, our approach operates directly on pre-extracted embeddings, eliminating the need for extensive joint pre-training while making no assumptions regarding the underlying modalities or foundation model backbones. Moreover, we introduce a joint optimization objective for simultaneously deriving the shared and unique components, and provide formal theoretical guarantees that characterize the optimality of our solution. Across diverse modalities and tasks, RePercENT successfully recovers disentangled components while maintaining competitive performance and significantly reducing computational complexity.

Disentangled representations separate factors that are shared across conditions from those that are condition-specific. Such separation is needed for generalization to new domains, treatments, patients, or species. A dominant line of work pursues this goal through variational formulations. While these approaches achieve partial disentanglement, they often exhibit three common limitations: they either do not remove all condition-specific information from the condition-specific representation, allow the condition-specific representation to become uninformative, or impose independence assumptions that do not reflect the underlying generative process. In this work, we introduce DisCoVR, a variational framework that addresses these limitations. Its objective is aligned with the probabilistic structure of the data-generating process, and includes an adversarial term that prevents condition-specific information from being encoded in the condition-specific representation.DisCoVR reconstructs the data from both shared and condition-specific representations, ensuring that each remains informative, and uses a structured prior that further reinforces the informativeness of both representations. We show that across synthetic, image, and single-cell RNA-sequencing datasets, DisCoVR achieves stronger disentanglement compared to previous approaches.

Disentangled representation learning aims to map independent factors of variation to independent representation components. On one hand, purely unsupervised approaches have proven successful on fully disentangled synthetic data, but fail to recover semantic factors from real data without strong inductive biases. On the other hand, supervised approaches are unstable and hard to scale to large attribute sets because they rely on adversarial objectives or auxiliary classifiers. We introduce \textsc{XFactors}, a weakly-supervised VAE framework that disentangles and provides explicit control over a chosen set of factors. Building on the Disentangled Information Bottleneck perspective, we decompose the representation into a residual subspace $\mathcal{S}$ and factor-specific subspaces $\mathcal{T}_1,\ldots,\mathcal{T}_K$ and a residual subspace $\mathcal{S}$. Each target factor is encoded in its assigned $\mathcal{T}_i$ through contrastive supervision: an InfoNCE loss pulls together latents sharing the same factor value and pushes apart mismatched pairs. In parallel, KL regularization imposes a Gaussian structure on both $\mathcal{S}$ and the aggregated factor subspaces, organizing the geometry without additional supervision for non-targeted factors and avoiding adversarial training and classifiers. Across multiple datasets, with constant hyperparameters, \textsc{XFactors} achieves state-of-the-art disentanglement scores and yields consistent qualitative factor alignment in the corresponding subspaces, enabling controlled factor swapping via latent replacement. We further demonstrate that our method scales correctly with increasing latent capacity and evaluate it on the real-world dataset CelebA. Our code is available at \href{https://github.com/ICML26-anon/XFactors}{github.com/ICML26-anon/XFactors}.