MOSAIC-FL, a micro-service based privacy-preserving framework with application to genomics

Federated Learning (FL) enables multiple clients to collaboratively train machine learning models while retaining data locality, thereby enhancing user privacy. However, traditional FL frameworks rely on a centralized aggregation server and assume honest-but-curious clients, making them susceptible to both server-side inference and client-side poisoning attacks. Although recent work has explored secure and Byzantine-resilient FL protocols, they face a fundamental trade-off among privacy, integrity, and verifiability, and incur substantial computational and communication overhead due to the heavy use of cryptographic primitives. In this work, we propose PRoVeFL-a novel, modular FL framework that is Privacy-preserving, Byzantine-Robust, and ensures Verifiable aggregation. PRoVeFL employs multiple servers leveraging multi-key fully homomorphic encryption. Each client encrypts its local model updates and distributes encrypted shares to all servers. This design enables a hybrid computation model in which ciphertext operations are carefully offloaded to the plaintext domain under strict privacy constraints to efficiently evaluate complex statistical aggregation rules. PRoVeFL is compatible with a wide range of state-of-the-art Byzantine-robust aggregation algorithms (e.g., Krum, Trimmed Mean, FLTrust, norm clipping, MESAS, and more) and further enhances them with verifiability mechanisms that require minimal trust in at least one honest server. We evaluate it across different settings and demonstrate its scalability with varying numbers of parameters and participants. PRoVeFL improves runtime over the prior works, Prio and ELSA, based on distributed trust with comparable security guarantees, up to 100x and 10x, respectively.

Federated Learning enables multiple clients to train a shared model while keeping their local datasets isolated. However, the exchanged model updates may still leak sensitive information, making private aggregation a central building block in practical deployments, especially in the cross-silo setting. Homomorphic Encryption naturally fits the client--aggregator communication pattern of Federated Learning, but conventional single-key deployments rely on strong non-collusion assumptions. Multiparty Homomorphic Encryption removes this limitation, although recent attacks under restricted decryption access require large-variance smudging noise during collaborative decryption, which significantly increases ciphertext size and implementation complexity. In this work, we propose lightweight multi-secret-key protocols for private average aggregation based on RLWE-based Homomorphic Encryption. Our construction departs from the usual multiparty blueprint by avoiding the generation of a collective public key. Instead, each client encrypts its update under its own secret key, while the resulting ciphertexts remain compatible with homomorphic aggregation and collaborative decryption. By explicitly tracking and cancelling the ciphertext noise during decryption, the protocol removes the need for large $λ$-dependent smudging noise. We instantiate the construction with both exact BFV-based and approximate CKKS-based variants, prove its security in the semi-honest model against an adversary corrupting the aggregator and up to $L-1$ clients, and compare its communication and runtime performance with state-of-the-art MHE-based aggregation. Our results show that the proposed approach substantially reduces ciphertext expansion and online cost, while preserving practical homomorphic aggregation performance.

Financial fraud increasingly exploits institutional boundaries: laundering networks distribute transactions across multiple banks because no single institution can observe the full pattern. Federated Learning (FL) enables collaborative detection without raw data sharing, yet practical deployment in banking environments remains constrained by three pressures. First, homomorphic encryption schemes impose high computational costs that limit real-time aggregation at scale. Second, mask-based protocols such as Google's SecAgg require O(N^2) pairwise key exchanges, which become inefficient as participant count grows. Third, existing protocols provide limited verification that submitted gradient updates are well-formed, leaving aggregation vulnerable to consistency attacks. This paper presents Dynamic Sharded Federated Learning (DSFL), a secure aggregation framework for cross-institution fraud detection. DSFL introduces Dynamic Stochastic Sharding, which partitions participants into small cryptographically ephemeral clusters of fixed size m, reducing communication complexity to O(N*m). Within each cluster, participants submit Linear Integrity Tags, additive-homomorphic commitments that allow the server to verify update consistency without decryption. The mechanism detects inconsistent updates rather than malicious gradients. An Active Neighborhood Recovery protocol handles mid-round dropouts by reconstructing orphaned masks. Experiments on the ULB Credit Card Fraud Detection dataset (284,807 transactions across 10 simulated banking nodes) show that DSFL achieves approximately 34x lower aggregation latency than Paillier-based secure aggregation at N=1000, based on analytical extrapolation from empirical baselines, while maintaining 99% recovery fidelity under a 20% dropout regime. Global fraud recall reached 91.2% (+/-0.8%), above the 68% average of locally trained models.