IchthyoNoma: Nomenclature and Context Sensitivity of Zero-Shot Biological Vision--Language Models for Bangladeshi Freshwater Fish Recognition

Camera traps often run in the field on edge hardware with limited or no connectivity, making small, locally-deployable vision-language models (VLMs) -- not frontier-scale ones -- the practically relevant class to evaluate for species identification. We test whether models in this deployment-relevant 2--8B range carry genuine taxonomic knowledge, evaluating four such VLMs (Qwen3-VL 2B/4B/8B, Gemma3 4B) against the domain-specific specialist BioCLIP (300M parameters) on a 96-species task, comparing clean iNaturalist photographs against camera-trap imagery from 6 LILA.science collections, on two independently-sampled evaluation sets. All models identify species far above chance, but every model -- general-purpose or specialist -- degrades sharply on field imagery (domain gaps of 9.6--26.6 percentage points, consistent across taxonomic levels and both evaluation sets), indicating the degradation reflects general image legibility rather than fine-grained discrimination failure. BioCLIP substantially outperforms every VLM tested (by 33.2--59.2 percentage points across an expanded 200-image sample for every model) despite its far smaller size, suggesting the gap reflects specialized training data rather than model scale; yet BioCLIP's own domain gap (18.0 points) is statistically indistinguishable from the best VLM's (22.3 points), suggesting the clean-to-field degradation itself is a property of the image-quality shift rather than a general-purpose-model weakness. Under open-set prompting, 5.9--9.6% of responses are syntactically valid but taxonomically nonexistent species names; the relative fabrication-rate ranking across models replicates exactly across both evaluation sets, a more robust finding than any single point estimate.

Vision-language models (VLMs), such as CLIP and SigLIP 2, are widely used for image classification, yet their vision encoders remain vulnerable to systematic biases that undermine robustness. In particular, correlations between foreground objects and their backgrounds constitute a salient and practically important class of spurious dependencies. In this work, we revisit the well-known property of high linear additivity in VLM embedding spaces and show that it enables a decomposition of scene representations into foreground and background components. Leveraging this insight, we introduce a pre-training approach that exploits this property to construct background-invariant representations using synthetic data. Our method achieves, to our knowledge, the first worst-group accuracy exceeding $90\%$ on Waterbirds under perfect ($100\%$) spurious correlation (i.e., no minority-group examples in the training data). Furthermore, it demonstrates strong sim-to-real transfer and requires no access to real-world debiased data, making it practical for real-world deployment.

Correct identification of fish species is highly significant for food security, economic development, and climate resilience in Bangladesh. Protein sequences directly reflect functional and evolutionary constraints which are important for species authentication and biodiversity monitoring. Yet there exists no benchmark for native Bangladeshi fish species identification from protein sequence. In this study, we addressed this gap by introducing the first curated dataset for nine native Bangladeshi fish species of 2845 high quality protein sequences. We also established the first protein sequence classification baseline for this domain through a systematic benchmarking of seven architectural paradigms. Moreover, we propose a realistic deployable novel hybrid architecture of MotifCNN and Transformer with Terminal-Aware Positional-Encoding (MotifCNN-Transformer+TA-PE). Our novel architecture achieves 79.80% accuracy with macro-F1 of 0.80. The highest 83.04% accuracy is achieved by finetuned protein language model ProtBERT that has 420M parameters and requires dual 16GB GPUs for inference. According to McNemar's test, ProtBERT's 3.24% accuracy gain over our MotifCNN-Transformer+TA-PE is statistically insignificant (p = 0.1120). Our novel architecture beats it among six of the nine classes in per class identification. Also our MotifCNN-Transformer+TA-PE is approximately 5x faster, 42x smaller, and supports 16x larger batch size than ProtBERT and has GPU free inference, making it more practical for deployment in resources constrained areas such as rural Bangladesh. Beyond this, our foundational work shows effects of phylogenetic relationships on sequence similarity and establishes pathways for fisheries management, food authentication and biodiversity conservation in South Asia's protein dependent economy.