Context operations to architecture modelling output from large language models and evaluation criteria for their use in systems engineering design

Engineering LLM-native software remains a challenging and immature field. Current practice is largely exploratory, relying on experimentation and heuristic techniques such as prompting and context engineering. These, however, are low-level and lack the principled structure needed to support design-level reasoning or analysis. In contrast, traditional software engineering leverages modularity and abstraction to communicate and analyze system behavior. To bring similar rigor to LLM-native development, we propose methods for documenting generative flows and for stating properties of LLM-based software designs. Such methods must account for the stochastic, prompt-dependent behavior of large language models while remaining expressive enough to capture emergent phenomena. Our initial approach is based on graphical probabilistic models, tailored to capture phenomena characteristic of LLM-native systems. This framework -- what we term Generation Networks -- aims to provide a foundation for principled reasoning about generative interactions and system-level properties in LLM-centric software architectures.

Context: Architectural Design Decisions (ADDs) capture the rationale behind the structure and evolution of software systems but are rarely documented explicitly, and are often hidden inside source code commits. Recovering them is important for Architectural Knowledge Management (AKM). Problem: Extracting ADDs from commits is challenging due to their implicit and unstructured nature. Large Language Models (LLMs) have shown strong capabilities in understanding code and text, yet their effectiveness for this task remains underexplored. Study: We present a preliminary study using four LLMs (Gemini 3 Pro, DeepSeek R1, Kimi K2, Qwen3) with zeroshot and fewshot prompting on 30 developer-written ADDs from open-source projects. We score outputs with ROUGE-L, BLEU, METEOR, and BERTScore, and one author manually reviews the Gemini outputs. Results: All models reach a BERT-F1 above 0.81, and fewshot prompting improves alignment (Gemini BERT-F1: 0.828 to 0.847). However, the generated ADDs are often too long, implementation-focused, and miss the rationale behind the decision. This highlights opportunities for architecture-aware LLM systems and automated AKM.

Large Language Model (LLM) agents are increasingly applied to engineering design tasks, yet existing evaluation frameworks do not adequately address multi-agent systems that combine simulation, retrieval, and manufacturing preparation. We introduce a benchmark suite with three evaluation dimensions: (1) a workflow benchmark with seven prompt styles targeting distinct cognitive demands-including direct tool use, semantic disambiguation, conditional branching, and working-memory tasks; (2) a Retrieval-Augmented Generation (RAG) benchmark with gated scoring isolating retrieval contributions to parameter selection; and (3) an High Performance Computing (HPC) benchmark evaluating end-to-end ML training orchestration on a SLURM cluster. Alongside the benchmark we present EngiAI, a Multi-Agent System (MAS) reference implementation built on LangGraph that operationalizes the benchmark by coordinating seven specialized agents through a supervisor architecture, unifying topology optimization, document retrieval, HPC job orchestration, and 3D printer control. Across four LLM backends and two EngiBench problems, proprietary models achieve 96-97% average task completion on Beams2D, while open-source 4B-parameter models reach 55-78%, with clear generational improvement. Conditional branching proves most challenging, with task completion dropping to 20-53% for the conditional style on Photonics2D. RAG gating confirms near-perfect retrieval-augmented scores (about 1.0) versus near-zero without retrieval, validating the evaluation design. On HPC orchestration, one model completes all pipeline steps in 100% of runs while another drops to 50%, revealing that multi-step instruction following degrades over long-running workflows.