Organizations: School of Computer Science, Shanghai Jiao Tong University, Shanghai, China · Shanghai Key Laboratory of Integrated Administration Technologies for Information Security, Shanghai, China
Relational table learning has gained increasing attention with the widespread use of relational databases. Existing methods typically rely on deep GNN or HGNN stacks, leading to high computational costs and limited performance on large real-world databases. We propose MetaRTL, a two-stage framework for scalable and expressive relational table learning. In the first stage, MetaRTL obtains initial table embeddings via lightweight pre-training. In the second stage, it performs non-parametric message passing to derive meta-path features, which are then aggregated by an attention module, MetaAttn. By shifting computation from deep message passing to efficient meta-path aggregation, MetaRTL captures rich relational semantics while maintaining high efficiency. Experiments on 10 real-world datasets across 24 tasks demonstrate the effectiveness of the proposed method.
Relational table learning has recently emerged as an important research direction for modeling multiple tables connected through primary key-foreign key (PK-FK) relationships. Despite recent advances, a principled modeling framework tailored to this task remains underexplored. In this paper, we propose Intra-Inter Relational Table Learning (InRTL), a unified framework that explicitly models dependencies both within and across relational tables. Specifically, InRTL formalizes two complementary interaction patterns: intra-table interactions, describing associations among rows within the same table, and inter-table interactions, describing dependencies between rows across PK-FK-linked tables. To model these dependencies, we develop a column-aware table encoder to generate initial row representations, followed by Transformer-based self-attention and cross-attention modules for intra-table and inter-table learning, respectively. To further improve scalability, InRTL incorporates linearized attention and heterogeneous graph neural networks to simplify the self-attention and cross-attention operations. Extensive experiments on ten datasets covering 24 real-world tasks demonstrate the effectiveness of our approach. Code is available at https://github.com/W1nterFloW/InRTL.
Relational databases (RDBs) are the primary data infrastructure in many enterprises, yet recent deep learning methods designed for RDBs have been evaluated under inconsistent experimental protocols, making fair comparison difficult. We present one of the first systematic benchmarking studies of recently released deep learning methods for RDBs, evaluating them across five relational databases, with one classification and one regression task for each. We refactor all deep RDB models to allow the full range of experimental procedures to be applied consistently across all methods. Our findings indicate that the relational transformer (RT) approach delivers the strongest overall performance on both classification and regression tasks compared to the state-of-the-art graph-based modeling and learning of RDBs. Even for single-table learning tasks, deep learning methods designed for RDBs outperform the leading tabular foundation model, TabPFN 2.5. Extending learning from a single table (hop = 0) to multiple tables (hop = 1, 2) by connecting neighboring tables in relational databases enhances performance, but the additional benefit from higher hops diminishes as computational overhead grows. Deep RDB learning methods have the potential to challenge state-of-the-art tabular foundation models, especially on large-scale enterprise data. The source code for this benchmarking study is publicly available.
Relational Deep Learning (RDL) models multi-tabular databases as temporal heterogeneous graphs for end-to-end representation learning. While RDL is evolving rapidly, existing approaches face significant generalization obstacles. They are either schema-specific, requiring training from scratch for every new database, or they rely on monolithic architectures that entangle feature encoding with graph message-passing. Analyzing these limitations, we establish four core pillars for building foundational relational models: semantic granularity, structural topology, temporal causality, and unified optimization. Addressing these pillars, we propose a modular approach that decouples row encoding from graph message-passing. We introduce the Universal Row Encoder, a transformer-based module that integrates raw cell data with schema metadata−including column semantics, table names, and global distribution statistics−to produce table-width invariant row embeddings. By explicitly feeding global statistics to an intra-row self-attention mechanism, the encoder natively contextualizes unseen features and handles sparse data. Serving as a flexible "backend" for any downstream graph architecture, our pretrained encoder enhances cross-database knowledge transfer on the established RelBench benchmarks while improving learning convergence and memory footprint.