An Empirical Study of VLM Pipelines for Long-Document QA

Visual long-document understanding is critical for enterprise, legal, and scientific applications, yet the best performing open recipes have not explored reasoning, a capability which has driven leaps in math and code performance. We introduce a synthetic data pipeline for reasoning in long-document understanding that generates thinking traces by scoring each page for question relevance, extracting textual evidence and ordering it from most to least relevant. We apply SFT to the resulting traces within \texttt{<think>} tags, gated by a \texttt{<cot>} control token, and the resulting reasoning capability is internalized via low-strength model merging. We study Qwen3 VL 32B and Mistral Small 3.1 24B. With Qwen3 VL, we achieve 58.3 on MMLongBenchDoc, surpassing the 7$\times$ larger Qwen3 VL 235B A22B (57.0). With Mistral, we show that synthetic reasoning outperforms distillation from the Thinking version's traces by 3.8 points on MMLBD-C, and internalized reasoning exhibits 12.4$\times$ fewer mean output tokens compared to explicit reasoning. We release our pipeline for reproducibility and further exploration.

Real-world documents combine text with tables, charts, photographs, and diagrams arranged in diverse layouts, yet existing research on multimodal large language models (MLLMs) for document QA predominantly produces text-only responses, underutilizing these visual elements. We introduce VinQA, a dataset for long-form answer generation where cited visual elements are explicitly interleaved with their supporting text and grounded in relevant document pages. To support this task, we study two encoding methods for feeding raw document page images into an MLLM, along with their visual-element citation mechanisms: (1) Page Encoding, which directly encodes full-page images with bounding boxes of visual elements and treats these boxed regions as citable units; and (2) Modality Encoding, which parses each page to extract text and crop visual elements, encodes them separately, and uses these cropped elements as citable units. In our experiments, we propose M-GroSE, a multimodal evaluation framework extending GroUSE to assess answers along four dimensions: completeness, answer relevancy, faithfulness, and unanswerability. We additionally report Visual Source F1 to directly measure visual citation accuracy. Although proprietary frontier models still achieve the best overall scores on the VinQA test split, fine-tuning open Qwen2.5-VL models on the training split substantially improves their performance and narrows this gap. Modality Encoding is initially more robust for complex documents with long text, many visual elements, and diverse citation requirements. After training on VinQA, however, Page Encoding reaches a comparable level, competing effectively even without the explicit parsing used in Modality Encoding. Finally, Visual G-Eval, an MLLM-based judge, confirms that fine-tuned models insert visual elements at semantically appropriate positions with faithful supporting text.

Long Document Visual Question Answering (LongDocVQA) requires Multimodal Large Language Models (MLLMs) to locate, integrate, and reason over heterogeneous document elements distributed across multiple pages. Existing approaches, including end-to-end MLLMs, retrieval-augmented generation (RAG) pipelines, and document agents, often lack explicit mechanisms to represent and verify how grounded evidence is progressively composed during reasoning, limiting both answer accuracy and traceability. In this paper, we cast LongDocVQA as an explicit evidence graph reasoning problem rather than implicit answer prediction. To this end, we propose DocTrace, a hierarchical framework that progressively performs evidence localization, structured document parsing, and evidence graph reasoning to enable explicit evidence provenance. To effectively learn these capabilities, we develop a two-stage training framework: joint Supervised Fine-Tuning (SFT) first initializes evidence localization and graph reasoning abilities, followed by task-specific Group Relative Policy Optimization (GRPO) with dedicated rewards to further optimize these capabilities. Extensive experiments on MMLongBench-Doc, LongDocURL, and SlideVQA demonstrate that DocTrace consistently outperforms both existing open-source baselines and proprietary MLLMs. Compared with the Qwen3-VL-8B-Instruct backbone, DocTrace achieves absolute improvements of 14.4, 11.3, and 11.7 points on the three benchmarks, respectively. Beyond competitive performance, DocTrace constructs traceable evidence graphs with explicit node-level provenance, enabling transparent and verifiable reasoning for long document understanding.