Organizations: Faculty of Electrical Engineering and Computer Science, Ningbo University, Ningbo, 315211, Zhejiang, China · Department of Computer Science and Technology, University of Cambridge, Cambridge, CB2 1TN, Cambridgeshire, United Kingdom
Hypergraph neural networks have achieved significant success in recent years. However, manual architecture crafting is labor-intensive and often fails to capture complex, higher-order relations, making the automation of hypergraph neural network structure design crucial. To improve the automation and adaptability of hypergraph learning, this paper proposes AutoHGNN, a neural architecture search framework tailored for hypergraph neural networks. First, we introduce a Hyper-Interaction Module (HIM) into the search space to address the mismatch between conventional graph neural network designs and hypergraph data. Second, we propose Hypergraph Stable Topological Distance (HyperSTD) as a structural selection criterion to identify architectures that best preserve the intrinsic structural affinities of the original hypergraph during differentiable search. Extensive experiments on various benchmark datasets demonstrate that AutoHGNN consistently outperforms manually designed and automatically searched baselines in classification accuracy and time efficiency, proving that the discovered architectures are significantly more effective.
Figures & tables
Method
Type
Message Passing
Complexity
HGNN [ 10 ]
Spectral
Laplacian
O(n2)
HyperGCN [ 45 ]
Spectral
Graph conversion
O(m⋅d)
HNHN [ 7 ]
Spectral
Hyperedge neurons
O(n⋅d)
HyperSAGE [ 1 ]
Spatial
Two-stage aggregation
O(sampling)
HGNN+ [ 14 ]
Spatial
Aggregation + update
O(nd+md)
UniG-Encoder [ 49 ]
Spatial
Projection-encoding-decoding
O(nd)
Table 1: Comparison of representative hypergraph neural network methodologies.
Figure 1: The overview of AutoHGNN. Green, orange and blue denote vertex-to-hyperedge aggregation, hyperedge-to-vertex aggregation and post-processing operations respectively. Varying depth of same color indicates different members of the same operation type that share the same weight ω . (a) The HGNN search space whose details are in Fig. 2 . (b) The search module with a weight-sharing supernet constructed from search space, a differentiable sampler and a supernet training modules. (c) Hypergraph neural architecture selection. In stage 1, promising candidates are selected from the j-th round of sampling and gradually merged into promising candidates set, so that the final architectures can be selected from them in stage 2.
Figure 2: Definition of search space in AutoHGNN. Each network layer consists of (a) a Hyper-Interaction Module layer with a vertex-to-hyperedge aggregator and a hyperedge-to-vertex aggregator and (b) a post-processing layer. All layers’ outputs are fused by the (c) feature aggregation operator F to get final output Z for downstream tasks. Xv(l) means vertex features of the l -th layer.
Table 6: Result on graph datasets. Bold and underlined texts indicate best and second-best models respectively. STPE indicates Search Time Per Epoch for NAS methods.
Method
Cora_CA
DBLP
Mean (%)
Std (%)
Mean (%)
Std (%)
GAT
66.95
1.00
83.06
0.48
GraphSAGE
72.38
0.95
84.69
0.09
SGC
66.56
0.47
83.05
0.32
GraphConv
70.71
0.40
83.17
0.37
GATv2
67.01
0.77
83.68
0.70
Table 7: Result on hypergraph datasets. Bold and underlined texts indicate best and second-best models respectively.
Figure 3: Hyperparameter sensitivity analysis of AutoHGNN Hyperparameter sensitivity analysis of AutoHGNN on (a) search epochs, (b) network depth, (c) temperature, and (d) training sample size. The X axis is the parameter value and Y axis is the average accuracy of 10 experiments on best architecture found by AutoHGNN.
Variant
Pubmed
Computers
Physics
Cora_CA
DBLP
AutoHGNN(mean+mean)
81.95 ± 0.12
84.92 ± 0.09
93.82 ± 0.08
67.26 ± 0.21
77.02 ± 0.11
AutoHGNN(w/o fusion)
79.98 ± 0.65
84.39 ± 0.37
93.97 ± 0.16
66.18 ± 0.12
86.47 ± 0.20
AutoHGNN(w/o HyperSTD)
82.01 ± 0.11
85.10 ± 0.09
94.85 ± 0.03
72.65 ± 0.44
88.09 ± 0.09
AutoHGNN
83.17 ± 0.23
87.02 ± 0.17
95.53 ± 0.04
73.76 ± 0.41
88.91 ± 0.07
Table 8: Ablation study results. Bold texts indicate the best model.
The increasing prevalence of large-scale hypergraphs poses significant computational challenges for hypergraph neural network (HNN) training. To address this, hypergraph condensation (HGC) distills large real hypergraphs into compact yet informative synthetic ones, beyond graph condensation (GC) methods limited to pairwise relations. However, existing HGC methods rely on decoupled training architectures, where structure generators are pre-trained on the original hypergraph but not jointly optimized with condensed features during refinement, resulting in misaligned structures that degrade downstream utility. Moreover, trajectory-based optimization incurs substantial computational overhead in refinement, limiting condensation efficiency. To tackle these issues, we propose \textbf{A}nchor-guided \textbf{H}yper\textbf{G}raph \textbf{C}ondensation with \textbf{D}ual-level \textbf{D}iscrimination (\textbf{AHGCDD}), which consists of three key components: (1) a node initialization module based on Heat Kernel PageRank (HKPR) to encode structural knowledge into feature semantics; (2) an anchor-guided hyperedge synthesis strategy for joint optimization of condensed features and structure; (3) a theoretically grounded dual-level discrimination objective for utility-preserving condensation without redundant HNN training. Extensive experiments demonstrate the superior effectiveness and efficiency of AHGCDD.
Fan Li, Xiaoyang Wang, Chen Chen +1
School of Computer Science and Engineering, University of New South Wales, Sydney, Australia · School of Artificial Intelligence, Shenzhen University, Shenzhen, China.
Hypergraph knowledge distillation aims to retain the predictive performance of a hypergraph neural network (HNN) teacher while reducing inference costs through a lightweight student model. In this work, we observe that HNNs exhibit substantially lower prediction performance on heterophilic nodes connected through semantically diverse hyperedges, indicating that the reliability of teacher knowledge varies across nodes. Motivated by this observation, we propose HADES, a heterophily-aware adaptive distillation method for hypergraph neural networks. HADES quantifies node heterophily and leverages it as an estimate of teacher reliability to modulate the transfer of teacher knowledge during distillation. Experimental results on real-world hypergraphs demonstrate that HADES consistently improves student performance across different HNN teachers and distillation objectives. In many cases, the resulting student models surpass the predictive performance of their teachers while achieving up to 12.3 times faster inference.
Joohee Cho, David Yoon Suk Kang, Yunyong Ko
Chung-Ang University · Seoul, South Korea · Chungbuk National University +1
Hypergraphs provide a natural framework to model higher-order interactions in scientific, social, and biological systems. Hypergraph neural networks (HGNNs) aim to learn from such data, yet it remains unclear which higher-order structures these models can represent. We show that hypergraph expressivity is governed by which small patterns an architecture can detect and count. We formalize this via homomorphism densities, which measure how often a structural motif appears in a hypergraph. Combining classical homomorphism-count completeness with invariant approximation, we show that homomorphism densities generate all continuous hypergraph invariants and organize them into a strict hierarchy indexed by hypertree width. This yields a Width Wall: a fundamental architectural limit beyond which no hidden dimension, training procedure or fixed-depth HGNN can represent invariants requiring wider patterns. Our framework provides a unified characterization of 15 HGNN architectures, precisely identifies information lost by clique expansion, and motivates density-aware models that extend expressivity beyond bounded-width message passing. We experimentally validate this finding on an APPLICATION NODE CLASSIFICATION SUITE of real-world hypergraphs, where the Width Wall predicts when graph-reduction baselines fail and when density features help.
Fengqing Jiang, Yuetai Li, Yichen Feng +6
University of Washington · Western Washington University · King Abdulaziz City for Science and Technology +1