Dating the Model: Hidden Dates in System Prompts Affect LLM Evaluation

Evaluations of LLM systems routinely average over small prompt sets and report models as a ranked table. We ask how much confidence such a table deserves, using LLM-based prompt-structure inference as the case study: eight open model variants across five families and 8B to 675B parameters, caching disabled, 293 raw intermediate representations persisted. The measured phenomenon is unstable to begin with. Identical calls do not reliably recover identical structure, with mean node-set Jaccard from 0.39 to 0.96 and 72% of prompt-model cells never node-set-perfect. Auditing the evaluation weakens its conclusions further, and this is our main contribution. Under a joint cluster bootstrap over prompts, only the bottom of the ranking is firm: the two least reproducible models hold rank in 99% and 86% of replicates, the middle four in 27% to 48%, and the top two in 68% each, so the table identifies the worst model reliably but does not reliably identify the best. Two equally defensible rules for merging repeated campaigns change four of eight rows and move the study-wide headline by 7 percentage points. Checking the inferred structure against ground-truth annotations shows reproducibility cannot be read as accuracy. And four of the eight endpoints were withdrawn within ten weeks of measurement, so the study as specified can no longer be run. Small-sample LLM evaluations can therefore look far more definitive than their evidence supports. We recommend reporting rank stability, per-cell provenance, executed sensitivity comparisons, raw per-run outputs, and a measurement date alongside any ranking.

Progress in LLMs is increasingly measured through standardized benchmarks, where state-of-the-art improvements are often separated by fractions of a percentage point. At the same time, the computational cost of evaluating modern LLMs has driven widespread adoption of specialized inference backends, software systems that execute trained models efficiently at inference time. While critical for scalability, system-level optimizations, such as custom CUDA kernels and reduced-precision arithmetic, can alter token probabilities and introduce non-determinism, possibly cascading into divergent generation. In this work, we first survey the inference landscape, identifying 200 distinct engines, and analyze 35,000 ML publications, finding that the specific inference stack is rarely reported despite this widespread diversity. We then present a systematic empirical study of how inference backends affect LLM benchmark results. Holding model weights, decoding parameters, and hardware constant, we evaluate five widely used inference engines, including vLLM, SGLang, and llama$.$cpp, across multiple open-weight models and established benchmarks. We show that the choice of backend alone can shift benchmark scores by up to 16.6 percentage points and induce high rates of output disagreement. By isolating backend optimizations and tracing the execution pipeline, we find this divergence is driven by system-level optimizations like prefix caching and CUDA graphs, custom kernels, and engine-specific defaults in logit processing. Our findings identify the inference backend as a previously unreported but consequential hyperparameter in the evaluation of LLM and advocate standardized reporting of inference stacks to improve the reproducibility and interpretability of benchmark comparisons.

Current Large Language Model (LLM) evaluation frameworks utilize the same static prompt template across all models under evaluation. This differs from the common industry practice of using prompt optimization (PO) techniques to optimize the prompt for each model to maximize application performance. In this paper, we investigate the effect of PO towards LLM evaluations. Our results on public academic and internal industry benchmarks show that PO greatly affects the final ranking of models. This highlights the importance of practitioners performing PO per model when conducting evaluations to choose the best model for a given task.