NeuronEye: Query-Guided Visual Concept Activation for Vision-Language Reasoning

Vision Language Models (VLMs) have demonstrated impressive performance in tasks requiring joint understanding of images and text, such as image captioning and Visual Question Answering (VQA), but our understanding of their internal processes remains limited. Recently, Sparse Autoencoders (SAEs) have emerged as a promising tool to support the interpretation of concepts encoded in VLMs. However, most SAE-based approaches focus only on textual or visual concepts separately, ignoring multimodal concepts. This limitation hinders a comprehensive understanding of VLMs, since concepts that integrate both modalities can be misclassified. Moreover, previous visual approaches often produce low-quality visual concept descriptions that are vague or incomplete, limiting their usefulness for understanding model reasoning. We propose a framework based on SAEs to extract and analyze visual, textual, and multimodal concepts from VLMs. For each neuron, we propose a candidate human-interpretable concept and compute the alignment between the concept and the dataset samples using cosine similarity scores. Experiments on a VQA dataset (LLaVA-NeXT) demonstrate that our framework improves visual concept quality by up to 45% compared to existing SAE-based methods, while maintaining high textual concept quality and enabling systematic identification of multimodal concepts. This work contributes new insights into the conceptual space of VLMs, providing a structured approach to distinguish between visual, textual, and multimodal concepts. The code is available at https://github.com/PHDLanza/Multidata_SAE

Large Vision Language Models (LVLMs) require strong reasoning over both visual and textual input. Recent work suggests that cognitive elements, especially diverse representations and metacognition, correlate with better performance. Many of the needed perceptual functions are already provided by specialized domain-specific computer vision models, which act as the perceptual subsystem for detecting objects, localizing them, inferring states, recovering spatial layout, and reading text. The key challenge is to integrate these multi-encoder experts into a trustworthy, interpretable, and coherent representation that improves verifiability and reduces hallucinations. This is difficult because vision-language questions span different cognitive levels, yet most LVLM pipelines apply the same perception-reasoning routing regardless of the demand of each query. We propose an evidence-driven multimodal reasoning framework that utilizes a Bloom-inspired taxonomy as a hierarchical reasoning protocol. The two-stage cognitive verbalization first produces a Literal Evidence Summary by decomposing expert outputs into short, atomic evidence statements. It then performs Bloom Verbalization to turn these evidence items into a staged reasoning trace, and a lightweight Reasoning Trace Module quantitatively analyzes the trace to make evidence usage and reasoning progression explicit. Through this integration, we observed several improvements in perception and reasoning abilities. Moreover, the trace module provides quantitative evidence that different queries induce different cognitive entry levels and evidence-use trajectories that enable fine-grained analysis.

Recent advances in language model interpretability using sparse autoencoders (SAEs) have yet to effectively translate to the visual domain, mainly due to the difficulty and ambiguity of labeling visual concepts. In this paper, we introduce Visual Interpretability via SAE Transfer Alignment (VISTA), a framework that transfers interpretability from language to vision in a LLaVA-style vision-language model by constraining a visual projector to map visual tokens into an LLM's pre-existing, labeled textual SAE space. This approach enables visual interpretability without training dedicated vision SAEs. By regularizing the projector using the LLM's SAE reconstruction loss, VISTA achieves a threefold increase in the matching rate, which measures how accurately the most activating textual concepts in the SAE space correspond to semantic elements in the image. Using this framework, we further analyze spatial localization properties of different vision encoders and show that DINOv2 features have stronger localization abilities than other encoders. Leveraging this precision, we validate VISTA's cross-modal alignment through fine-grained, localized concept interventions, where specific objects are removed or replaced in the model's perception while preserving the surrounding scene. This results in improvements of 35% in object removal and 47% in object replacement tasks over vision-only baselines, providing causal evidence that visual tokens inhabit the text SAE manifold. These contributions are validated across multiple LLM architectures.