GDBA-Net: A Gated Dual-Branch Adaptation of SAM2 for Robust Cross-Domain Nuclei Segmentation

Histopathology nuclei segmentation is crucial for quantitative tissue analysis and cancer diagnosis. Although existing segmentation methods have achieved strong performance, they are often computationally heavy and show limited generalization across datasets, which constrains their practical deployment. Recent SAM-based approaches have shown great potential in general and medical imaging, but typically rely on prompt guidance or complex decoders, making them less suitable for histopathology images with dense nuclei and heterogeneous appearances. We propose a prompt-free and lightweight SAM adaptation that leverages multi-level encoder features and residual decoding for accurate and efficient nuclei segmentation. The framework fine-tunes only LoRA modules within the frozen SAM encoder, requiring just 4.1M trainable parameters. Experiments on three benchmark datasets TNBC, MoNuSeg, and PanNuke demonstrate state-of-the-art performance and strong cross-dataset generalization, highlighting the effectiveness and practicality of the proposed framework for histopathology applications.

Accurate classification of nuclei subtypes in histopathology images is critical for downstream tasks including tumor grading, immune infiltrate quantification, and prognosis prediction. Existing approaches rely on either convolutional or transformer-based encoders in isolation, limiting their ability to simultaneously capture fine-grained local texture and long-range spatial context. We present AMN (Adaptive Multi-Scale Nuclei Network), a dual-encoder segmentation framework that jointly leverages a Swin Transformer and a ResNet-50 feature pyramid, fused via a learned per-channel gating mechanism that dynamically weighs each encoder's contribution at every scale. AMN is trained with a multi-objective loss combining class-weighted focal loss, boundary-aware loss with positive-pixel emphasis, and a novel uncertainty-modulated classification term that suppresses overconfident erroneous predictions. Evaluated on the CoNIC benchmark across seven nuclei classes, AMN achieves a mean Dice of 0.82 and mean F1 of 0.68, with an F1 of 0.67 on the diagnostically challenging lymphocyte class. AMN outperforms eight baseline models spanning pure-CNN, pure-transformer, and recent hybrid architectures: U-Net, ResU-Net, DeepLabV3+, SegNet, ViT-Small, HmsU-Net, ConvFormer-UNet, and BEFUnet. Cross-dataset evaluation on MoNuSeg demonstrates strong generalization without retraining and validating the domain robustness of the learned representations.

Nuclei instance segmentation is critical in computational pathology for cancer diagnosis and prognosis. Recently, the Segment Anything Model has demonstrated exceptional performance in various segmentation tasks, leveraging its rich priors and powerful global context modeling capabilities derived from large-scale pre-training on natural images. However, directly applying SAM to the medical imaging domain faces significant limitations: it lacks sufficient perception of the local structural features that are crucial for nuclei segmentation, and full fine-tuning for downstream tasks requires substantial computational costs. To efficiently transfer SAM's robust prior knowledge to nuclei instance segmentation while supplementing its task-aware local perception, we propose a parameter-efficient fine-tuning framework, named Cooperative Fine-Grained Refinement of SAM, consisting of three core components: 1) a Multi-scale Adaptive Local-aware Adapter, which enables effective capability transfer by augmenting the frozen SAM backbone with minimal parameters and instilling a powerful perception of local structures through dynamically generated, multi-scale convolutional kernels; 2) a Hierarchical Modulated Fusion Module, which dynamically aggregates multi-level encoder features to preserve fine-grained spatial details; and 3) a Boundary-Guided Mask Refinement, which integrates multi-context boundary cues with semantic features through explicit supervision, producing a boundary-focused signal to refine initial mask predictions for sharper delineation. These three components work cooperatively to enhance local perception, preserve spatial details, and refine boundaries, enabling SAM to perform accurate nuclei instance segmentation directly.