Hidden Cartographer: Hidden State Guided Data Selection for Dual Budgeted Instruction Tuning

Instruction fine-tuning of large language models (LLMs) often involves selecting a subset of instruction training data from a large candidate pool, using a small query set from the target task. Despite growing interest, the literature on targeted instruction selection remains fragmented and opaque: methods vary widely in selection budgets, often omit zero-shot baselines, and frequently entangle the contributions of key components. As a result, practitioners lack actionable guidance on selecting instructions for their target tasks. In this work, we aim to bring clarity to this landscape by disentangling and systematically analyzing the two core ingredients: data representation and selection algorithms. Our framework enables controlled comparisons across models, tasks, and budgets. We find that only gradient-based data representations choose subsets whose similarity to the query consistently predicts performance across datasets, models, and candidate pools. While no single method dominates, gradient-based representations paired with greedy round-robin selection often perform best on average at low budgets, but these gains diminish at larger budgets. Finally, we unify several existing selection algorithms as forms of approximate distance minimization between the selected subset and the query set, and support this view with new generalization bounds. More broadly, our findings provide critical insights and a foundation for more principled data selection in LLM fine-tuning. The code is available at https://github.com/dcml-lab/targeted-instruction-selection.

Finetuning data selection requires balancing two competing goals: selecting examples that improve the downstream objective, and doing so without repeatedly finetuning models. Train-free selectors are scalable but rely on proxies such as embedding similarity or clustering, which may not match the target objective. Train-based selectors better reflect downstream utility through gradient signals, subset evaluation, or Shapley attribution, but require many costly train-evaluate iterations. We propose Hierarchical Active Region Pruning (HARP), an efficient train-based selector that preserves downstream alignment while reducing selection cost. HARP organizes the training pool into a node-leaf hierarchy, evaluates only representative leaves, and infers unmeasured utilities with empirical Bayes posteriors. It then selects data using two complementary envelopes: HARP-C, which conservatively controls redundancy, and HARP-E, which additively rewards complementary regions. We theoretically show that, under local smoothness and bounded estimation error, HARP controls selection error while reducing train-evaluate cost. Across 3 base models, 3 finetuning datasets, and 4 reasoning benchmarks (36 settings), HARP variants achieve the highest accuracy among ranked methods in 23 settings and obtain 36-setting mean accuracies of 64.2 and 63.5, respectively, compared with 59.3 for the strongest baseline, NICE. HARP-C trains on roughly 9x fewer examples than the budgeted baselines and 75x fewer than full finetuning, combining higher mean accuracy with a smaller mean training-set size than every ranked baseline.

Data selection is increasingly used to reduce the cost of large language model (LLM) fine-tuning, with recent methods prioritizing samples by current utility, diversity, quality, or influence. This paper studies a different question: when fine-tuning occurs over multiple stages, can selection strategies that look optimal now make the model less adaptable later? We introduce a long-horizon view of LLM data selection in which a selector is evaluated not only by immediate task performance, but also by future adaptation speed, forgetting, capability imbalance, and out-of-distribution robustness. We compare representative random, loss-based, gradient-based, diversity-based, quality-based, and utility-diversity selection families under a unified multi-stage protocol. Through controlled experiments designed to instantiate this protocol, we show how short-term selectors can exhibit rank reversal: they improve the current stage while slowing subsequent learning and increasing forgetting. We formalize this behavior as myopic selection, provide a simple local analysis of why it can occur, and propose a diagnostic Long-Horizon Aware Selection (LHAS) objective that augments immediate utility with coverage, future-proxy transfer, and anti-concentration terms. The study argues that data selection should be evaluated as a training intervention that shapes the model's learning trajectory, rather than only as a local data-efficiency mechanism.