Differentially Private GraphRAG: Protecting Relation Connectivity and Semantics

Retrieval-Augmented Generation (RAG) enhances LLMs by grounding generation in query-relevant external evidence. Beyond unstructured text corpora, Graph RAG integrates knowledge graphs into the retrieval pipeline, enabling LLMs to access entities, relations, and multi-hop dependencies encoded in structured knowledge. However, the same structured knowledge that empowers Graph RAG also creates a new privacy attack surface. We demonstrate that Graph RAG systems can be turned into structural oracles: through adaptive black-box interactions, an adversary can elicit sufficient relational evidence to reconstruct substantial portions of the hidden knowledge graph. We propose a structure-oriented reconstruction framework that recovers targeted graphs from both local and global perspectives. Specifically, Depth-Wise Heuristic Search extracts fine-grained node attributes by recursively expanding entity-centered evidence, while Breadth-Wise Diffusion Search infers graph topology by propagating across relation-induced neighborhoods. Experiments on generic and healthcare scenarios demonstrate that our method can recover over 90% of the original knowledge graph from representative Graph RAG systems, revealing sensitive entities, relations, and structural dependencies with high fidelity. Existing guradrails provide limited defense against our attack, highlighting the inherent difficulty of safeguarding structural privacy in Graph RAG pipelines.

Retrieval-Augmented Generation (RAG) enhances the capabilities of large language models (LLMs) by querying external structured knowledge. However, it can also introduce privacy risks by leaking sensitive information from the retrieval datastore. We propose a simple method to preserve datastore privacy in RAG systems via random projection. By applying the same projection to both datastore embeddings and query embeddings, our method provably preserves semantic similarity between queries and retrieved items while substantially mitigating data extraction attacks. Across multiple RAG architectures and datasets, we show that this lightweight approach achieves superior retrieval and generation performance compared to prior methods which leverage formal differential privacy (DP) guarantees, while exhibiting comparable empirical privacy under strong attack models. Our results for the first time suggest that random projection can serve as a competitive and practical baseline for privacy-preserving RAG systems.

Regulatory frameworks such as GDPR increasingly require that ML predictions be accompanied by post-hoc explanations, even when raw data and trained models cannot be released. Differential privacy (DP) is the standard mitigation for the residual privacy risk of releasing these explanations. We show that DP is not sufficient: an adversary observing only DP-perturbed GNN explanations can reconstruct hidden graph structure with high accuracy. Our attack, PRIVX, exploits the fact that the Gaussian DP mechanism is a single DDPM forward step at known noise level σ(ε), recasting reconstruction as reverse diffusion conditioned on the corrupted signal, a principled Bayesian denoiser under known DP corruption. We formalise a stratified adversary model parameterised by (M, \hatε, \hatδ, S, ρ) that interpolates between oblivious and oracle attackers, and derive endpoint-matched two-sided bounds on reconstruction AUC. For practitioners, we provide regime-stratified guidance on explainer choice: on homophilic graphs, neighbourhood-aggregating explainers (GraphLIME, GNNExplainer) leak more structure than per-node gradient explainers under the same DP budget; on strongly heterophilic graphs the ordering reverses. We introduce PRIVF as an auxiliary diagnostic sharing the same diffusion backbone to decompose leakage into explainer-induced and intrinsic graph-distribution components. Experiments across seven benchmarks, three DP mechanisms, and three GNN backbones show PRIVX achieves AUC above 0.7 at ε = 5 on five of seven datasets, with the attack succeeding well within typically deployed privacy budgets.