Explaining a probabilistic prediction on the simplex with Shapley compositions
Authors: Paul-Gauthier Noé, Miquel Perelló-Nieto, Jean-François Bonastre, Peter Flach
Organizations: Laboratoire Informatique d’Avignon, Avignon Universit´e, France · University of Bristol, United Kingdom
Abstract
Originating in game theory, Shapley values are widely used for explaining a machine learning model's prediction by quantifying the contribution of each feature's value to the prediction. This requires a scalar prediction as in binary classification, whereas a multiclass probabilistic prediction is a discrete probability distribution, living on a multidimensional simplex. In such a multiclass setting the Shapley values are typically computed separately on each class in a one-vs-rest manner, ignoring the compositional nature of the output distribution. In this paper, we introduce Shapley compositions as a well-founded way to properly explain a multiclass probabilistic prediction, using the Aitchison geometry from compositional data analysis. We prove that the Shapley composition is the unique quantity satisfying linearity, symmetry and efficiency on the Aitchison simplex, extending the corresponding axiomatic properties of the standard Shapley value. We demonstrate this proper multiclass treatment in a range of scenarios.
We address the problem of explainability in machine learning models through feature attribution methods. In particular, we consider a variant of Shapley values known as Asymmetric Shapley Values (ASV), which enables the incorporation of causal knowledge into model-agnostic explanations through the use of a causal graph. We show that in certain contexts in which the computation of SHAP is #P-hard, the exact computation of ASV can be done in polynomial time. To extend this algorithmic result, we introduce a notion of equivalence classes over the topological orderings of the underlying causal graph, which is useful to reduce the time to compute ASV. In particular, we present a polynomial-time algorithm (in the number of equivalence classes) to compute it whenever the causal graph is a rooted directed tree. Finally, we develop an algorithm for approximating ASV in arbitrary causal DAGs which relies on a procedure to sample topological orderings uniformly at random. To implement this sampling mechanism we leverage known algorithms as well as simpler alternatives. Our experimental results demonstrate the practical viability of the proposed approach in realistic causal structures.
Ezequiel Companeetz, Santiago Cifuentes, Sergio Abriola
We study the efficient computation of Shapley values for \emph{product games} -- cooperative games in which the coalition value factorizes as a product of per-player terms. Such games arise in machine learning explainability whenever the value function inherits a multiplicative structure from the underlying model, as in kernel methods with product kernels and tree-based models. Our key result is that the Shapley value of each player in a product game admits an exact one-dimensional integral representation: the weighted sum over exponentially many feature coalitions collapses to the integral of a degree-(d−1) polynomial over [0,1], where d is the total number of features. This yields a Gauss--Legendre quadrature scheme that is \emph{provably exact} whenever the number of nodes satisfies mq≥⌈d/2⌉, and otherwise provides a \emph{near-exact} approximation with error provably decaying geometrically in mq. In practice, a few hundred nodes can achieve highly precise estimates even with thousands of features. Building on this formulation, we derive a numerically stable implementation via log-space evaluation, together with an efficient parallel implementation based on associative scan primitives that achieves O(dmq) total work and O(logd) parallel time. Experiments show that \textsc{QuadraSHAP} is the fastest numerically stable method across all tested configurations.
Majid Mohammadi, Grigory Reznikov, Pavel Sinitcyn +2
Machine learning pipelines commonly flatten relational data into single-table representations, discarding structural constraints. Widely used Shapley value-based feature attributions then rely on feature independence, evaluating the model on combinations that could never arise in the underlying data, producing misleading explanations. We propose RelShap, a framework that incorporates relational constraints and data provenance into Shapley value computation, restricting both background data and coalition evaluation to relationally valid configurations. The framework is estimator-agnostic and composes with Kernel SHAP, Monte Carlo, and Leverage SHAP without altering their sampling or weighting properties. Functional dependencies further induce equivalence classes over feature coalitions, which RelShap exploits to reduce runtime without changing Shapley values; we provide a combinatorial characterization of the expected speedup. Experiments across multiple datasets, models, and estimators show that RelShap produces explanations that are more faithful to the data-generating process, correctly identifying the dominant feature in controlled settings where existing methods, including Conditional SHAP and ManifoldShap, do not. Our code is available at: https://github.com/duneag2/relshap.