Investigating ECG Diagnosis with Ambiguous Labels using Partial Label Learning
Authors: Sana Rahmani, Javad Hashemi, Ali Etemad
Organizations: Electrical and Computer Engineering Department, Queen’s University, Canada · School of Computing, Queen’s University, Canada
Abstract
Label ambiguity is an inherent and largely unaddressed challenge in real-world electrocardiogram (ECG) diagnosis, arising from overlapping conditions and diagnostic disagreements. However, current ECG models are trained assuming clean and non-ambiguous annotations, limiting both the development and meaningful evaluation of models under real-world conditions. Although Partial Label Learning (PLL) frameworks are designed to learn from ambiguous labels, their effectiveness in medical time-series domains, ECG in particular, remains largely underexplored. We present the first systematic study of PLL methods for ECG diagnosis under both real and controlled ambiguity. First, we adapt nine PLL algorithms to multi-label ECG diagnosis under label ambiguity, and perform detailed evaluations on real clinical settings with multi-annotator diagnostic disagreements. Next, to study PLL effects on ECG in more depth under controlled settings, we introduce a diverse set of clinically motivated synthetic label ambiguities. Our experiments demonstrate that PLL methods vary substantially in robustness across ambiguity types and levels. Moreover, we observe that PLL generally outperforms standard supervised training under label ambiguity, highlighting the value of such frameworks. Through extensive analysis, we identify key limitations of current PLL approaches for clinical settings and outline future directions for developing robust and clinically aligned ambiguity-aware learning frameworks for ECG diagnosis.
Electrocardiogram (ECG) classification models often suffer from severe label scarcity, making semi-supervised learning (SSL) an attractive strategy for reducing annotation costs. In clinical settings, however, unlabeled pools frequently contain out-of-distribution (OOD) anomalies or diagnostic groups absent from the labeled set. Standard SSL forces incorrect pseudo-labels onto these unseen classes, producing overconfident predictions. To address this, we propose SafeECGMatch, a calibration-aware safe SSL framework for single-label ECG classification under label distribution mismatch. Methodologically, SafeECGMatch employs a dual-branch architecture extracting time-frequency latent representations via ECG-specific augmentations. Crucially, it dynamically aligns confidence with empirical accuracy through adaptive label smoothing and temperature scaling, calibrating both the multiclass classifier and the OOD detector across temporal and spectral domains. This joint optimization allows trustworthy OOD rejection and reliable pseudo-labeling. Evaluated on the PTB-XL and PhysioNet/CinC Challenge benchmarks, SafeECGMatch achieves state-of-the-art accuracy and calibration, advancing reliable knowledge discovery in physiological time-series. Code is available at https://github.com/labhai/SafeECGMatch.
Long-tailed label distributions reduce the reliability of deep learning for electrocardiogram (ECG) arrhythmia diagnosis, particularly for clinically important but rare abnormalities. Existing rebalancing and logit adjustment methods mainly address class frequency while overlooking direction-dependent morphological variability across ECG classes. This study proposes Angular Gaussian Supervised Contrastive Learning (AG-SCL) for long-tailed multi-label ECG diagnosis. AG-SCL integrates three components into a unified framework: an Angular Gaussian contrastive branch that models full-covariance class uncertainty on unit-normalized embeddings, Adaptive Logit Adjustment that learns bounded label-state-specific prior corrections instead of fixed frequency-based margins, and tail-aware augmentation that generates morphology-preserving views while protecting the 7-25 Hz QRS-dominant band. The method was evaluated on the public PTB-XL benchmark and a nocturnal ECG dataset comprising 1317 hours of recordings from 141 subjects. AG-SCL achieved the best macro-level performance on both datasets. On PTB-XL, it obtained a balanced accuracy of 0.838, sensitivity of 0.709, specificity of 0.968, mean average precision of 0.495, and TPR at 5% FPR of 0.778. On Noc-ECG, the corresponding values were 0.918, 0.889, 0.947, 0.488, and 0.900. The largest gains occurred in rare or morphologically unstable rhythm classes, while ablation studies confirmed the contributions of full-covariance modelling, Adaptive Logit Adjustment, and tail-aware augmentation. AG-SCL improves long-tailed ECG diagnosis by combining prior calibration with anisotropic representation learning, enhancing sensitivity to rare arrhythmias while maintaining clinically relevant specificity. Our code is available at: https://github.com/Open-EXG/AG-SCL-for-Long-Tailed-ECG.
The accurate automated diagnosis of cardiac abnormalities from 12-lead electrocardiograms (ECGs) is critical for managing cardiovascular disease. However, detecting concurrent conditions remains a challenge for traditional deep learning models, which often have limited ability to model the long-range dependencies inherent in ECG signals. This manuscript proposes HexagonalWarriorMamba (HWMamba), a framework built on the Mamba architecture that processes 12-lead ECGs as single-channel 2D images rather than conventional 1D time series. By integrating a hierarchical architecture with a 2D Selective Scan mechanism, HWMamba is designed to model global context and complex spatial relationships within the data. The model is evaluated on the PhysioNet/Computing in Cardiology Challenge 2021 dataset, which includes 26 diagnostic labels and comprises recordings collected from seven institutions across four countries and three continents. Results demonstrate that HWMamba outperforms current state-of-the-art (SOTA) methods across five key threshold-dependent metrics, including Challenge Score and Subset Accuracy. These improvements provide a balance between strong discriminative capability and effective threshold selection derived from the training data, while maintaining near-SOTA performance in Macro AUROC. This Hexagonal Warrior performance, reflecting consistent performance across multiple evaluation dimensions, positions HWMamba as a robust and versatile approach for multi-label ECG classification.