SafeECGMatch: Calibration-Aware Joint Frequency and Time Space Semi-Supervised Learning for Open-Set ECG Classification

Label ambiguity is an inherent and largely unaddressed challenge in real-world electrocardiogram (ECG) diagnosis, arising from overlapping conditions and diagnostic disagreements. However, current ECG models are trained assuming clean and non-ambiguous annotations, limiting both the development and meaningful evaluation of models under real-world conditions. Although Partial Label Learning (PLL) frameworks are designed to learn from ambiguous labels, their effectiveness in medical time-series domains, ECG in particular, remains largely underexplored. We present the first systematic study of PLL methods for ECG diagnosis under both real and controlled ambiguity. First, we adapt nine PLL algorithms to multi-label ECG diagnosis under label ambiguity, and perform detailed evaluations on real clinical settings with multi-annotator diagnostic disagreements. Next, to study PLL effects on ECG in more depth under controlled settings, we introduce a diverse set of clinically motivated synthetic label ambiguities. Our experiments demonstrate that PLL methods vary substantially in robustness across ambiguity types and levels. Moreover, we observe that PLL generally outperforms standard supervised training under label ambiguity, highlighting the value of such frameworks. Through extensive analysis, we identify key limitations of current PLL approaches for clinical settings and outline future directions for developing robust and clinically aligned ambiguity-aware learning frameworks for ECG diagnosis.

Electrocardiogram (ECG) arrhythmia classification remains challenging due to signal variability, noise, limited labeled data, and the difficulty in achieving both accuracy and efficiency in models. While self-supervised learning reduces label dependency, most methods target either global contextual features or local morphological patterns, but rarely implement hierarchical multi-scale feature extraction. ECG signals require architectures that simultaneously capture fine-grained beat-level morphology and broader rhythm-level dependencies with computational efficiency. To overcome this limitation, this paper proposes the Electrocardiogram Neighborhood Attention Transformer (ECG-NAT), a novel self-supervised learning approach tailored for multi-lead ECG classification. Our two-stage approach begins with generative pretraining, using a masked autoencoder to reconstruct partially masked ECG signals across multiple diverse datasets, enabling the model to learn robust, domain-invariant representations from unlabeled data. This is followed by discriminative fine-tuning with a dual-loss function that combines supervised contrastive and cross-entropy losses, aligning representation learning with label prediction. The hierarchical attention mechanism efficiently captures multi-scale temporal features from localized beat morphology to broader rhythm patterns at low computational cost. ECG-NAT achieves robust performance on benchmark datasets, with 88.1% accuracy using only 1% labeled data, demonstrating strong efficacy in low-resource settings. The framework combines superior classification performance with computational efficiency, making it practical for real-time ECG diagnosis. The code will be made available upon acceptance at: https://github.com/Mahsagazeran/ECG-NAT.

Long-tailed label distributions reduce the reliability of deep learning for electrocardiogram (ECG) arrhythmia diagnosis, particularly for clinically important but rare abnormalities. Existing rebalancing and logit adjustment methods mainly address class frequency while overlooking direction-dependent morphological variability across ECG classes. This study proposes Angular Gaussian Supervised Contrastive Learning (AG-SCL) for long-tailed multi-label ECG diagnosis. AG-SCL integrates three components into a unified framework: an Angular Gaussian contrastive branch that models full-covariance class uncertainty on unit-normalized embeddings, Adaptive Logit Adjustment that learns bounded label-state-specific prior corrections instead of fixed frequency-based margins, and tail-aware augmentation that generates morphology-preserving views while protecting the 7-25 Hz QRS-dominant band. The method was evaluated on the public PTB-XL benchmark and a nocturnal ECG dataset comprising 1317 hours of recordings from 141 subjects. AG-SCL achieved the best macro-level performance on both datasets. On PTB-XL, it obtained a balanced accuracy of 0.838, sensitivity of 0.709, specificity of 0.968, mean average precision of 0.495, and TPR at 5% FPR of 0.778. On Noc-ECG, the corresponding values were 0.918, 0.889, 0.947, 0.488, and 0.900. The largest gains occurred in rare or morphologically unstable rhythm classes, while ablation studies confirmed the contributions of full-covariance modelling, Adaptive Logit Adjustment, and tail-aware augmentation. AG-SCL improves long-tailed ECG diagnosis by combining prior calibration with anisotropic representation learning, enhancing sensitivity to rare arrhythmias while maintaining clinically relevant specificity. Our code is available at: https://github.com/Open-EXG/AG-SCL-for-Long-Tailed-ECG.